Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_C01
(367 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.30
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 27 0.69
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 26 2.1
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 26 2.1
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 2.1
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 2.8
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 3.7
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 25 4.9
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 4.9
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 24 6.4
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 24 8.5
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 24 8.5
SPAPB18E9.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 8.5
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 24 8.5
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 24 8.5
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy... 24 8.5
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.30
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 114 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 221
++ L+ A L + YQ S +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 27.5 bits (58), Expect = 0.69
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 179 PQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 328
P F ++D L +YR+K +D HD K+ ++ EE+ Y+ ++ + + F
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED-YLGWSRFCDLF 163
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 2.1
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 191 VNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEEQRLTY 361
+NMD LL Y TK D + +NY ++ Y + N ++F+ +++RL +
Sbjct: 289 MNMDILLDSYLTKAMDIHATFIQKLNYDLI--NLLYEPFHNIYSSFIKPIDDRRLEF 343
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 2.1
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 200 DTLLKIYRTKMQDG-ILHDAKAINYGIVKEEEQYVYYANYS 319
D + I R K G + HD +NY ++ E++ + N S
Sbjct: 83 DNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTENAS 123
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 25.8 bits (54), Expect = 2.1
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -1
Query: 337 IVKESVGIVG-VIHI-LLFLFYNSIINSLCIVKN 242
+ KE I+ +++I ++FLF N +++ +C VKN
Sbjct: 22 VAKEKYKIIHRLLYISIIFLFLNYVVDIVCYVKN 55
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 2.8
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 289 FLFYNSIIN-SLCIVKNTVLHFSAINLK*SVHINEE 185
FLF N N SLC ++T F + S+HI E
Sbjct: 699 FLFSNGSCNTSLCYYESTDPDFGGLKTPMSIHIERE 734
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 3.7
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 86 NEGQFL-YAYYIAVIQRNDTHG 148
N G FL YA++ VI+ D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 24.6 bits (51), Expect = 4.9
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 268 LWNCKRGRAVCVLRQLFQH 324
+WN + G +C R+ +QH
Sbjct: 202 IWNSETGEKICEFRRGYQH 220
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 233 QDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEE 346
Q+ ++ + + +G+V E ++V S TFL +NE+
Sbjct: 128 QNILVQVCQPVRHGVVDSETKFVIERKDSFTFLASNEK 165
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 24.2 bits (50), Expect = 6.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 118 NIICVQELSLI*VHTSESGTLVEGFKVFSIVEQVEKSNS 2
++ICVQEL + + +VEGF + ++ K S
Sbjct: 36 DVICVQELKMQKDSFPQQYAVVEGFDSYFTFPKIRKGYS 74
>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 23.8 bits (49), Expect = 8.5
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +2
Query: 26 YYAKDFETFYKSAAFARVHLNEGQFLYAYYIAVIQRNDTHGFVLPAPYEVYPQFF-VNMD 202
Y+A F + + R+H +++ A GF+ PY ++P FF ++
Sbjct: 134 YWAHRF--LHHRYVYPRLHKLHHKWIICTPYASHAFKSADGFLQSLPYHLFPFFFPLHKL 191
Query: 203 TLLKIYR-TKMQDGILHDAKAIN 268
T L ++ ++HD K I+
Sbjct: 192 TYLALFTFVNFWSIMIHDGKYIS 214
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 23.8 bits (49), Expect = 8.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 93 DSSCTHIILQLSSAMILMDSFYQLLMKFIHNSSLIWTLY 209
D+ TH SS ++LMD QL+ HN +++ +
Sbjct: 436 DNRFTHASPNRSSCVVLMDELDQLV---THNQKVLYNFF 471
>SPAPB18E9.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 44
Score = 23.8 bits (49), Expect = 8.5
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 343 FIIVKESVGIVGVIHILLFLFYNSIINSLCIV-KNTVLH 230
F IVKE VG+ G+ I+ FL SI S C+ KN H
Sbjct: 2 FSIVKEEVGLPGM--IIYFLLQISI--SRCVFSKNGFYH 36
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 147 DSFYQLLMKFIHNSSLIWTLYLRFI 221
D F + L+ +H +IW LYL+F+
Sbjct: 96 DCFERSLI-LLHKMPVIWKLYLQFL 119
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 23.8 bits (49), Expect = 8.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 281 KEEEQYVYYANYSNTFLYNNEEQRL 355
KE E+YV AN +FLY +E+ L
Sbjct: 52 KEPEKYVSDANAIVSFLYWKQEEDL 76
>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 23.8 bits (49), Expect = 8.5
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +3
Query: 147 DSFYQLLMKFIHNSS--LIWTLYLRFIALKCKTVFF 248
+ Y +K + S LIW + L F+ TVFF
Sbjct: 115 EEHYGTFVKIVEEGSYPLIWLIRLSFLPTHFTTVFF 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,558,601
Number of Sequences: 5004
Number of extensions: 30467
Number of successful extensions: 78
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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