Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C01
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     28   2.0  
08_01_0914 + 9010613-9013316,9013537-9013748                           28   2.0  
01_06_0693 - 31280108-31281271                                         28   2.6  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    27   3.4  
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653...    27   6.0  
08_02_0484 + 17665714-17666877                                         26   7.9  
02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,522...    26   7.9  
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92...    26   7.9  

>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 29  YAKDFETFYKSAAFARVHLNEGQFLYAYYIAV 124
           Y KD   FY  +   +  + EG+FL ++Y+ +
Sbjct: 697 YVKDSRLFYSFSESTKELVQEGEFLQSFYVQI 728


>08_01_0914 + 9010613-9013316,9013537-9013748
          Length = 971

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -1

Query: 304 IHILLFLFYNSIINSLCIVKNTVLHFSAINLK*SVHINEELWIN 173
           +H+L+F    ++I+S+C +  T   F    +K +V  NE L++N
Sbjct: 656 LHVLIFCIVGTLISSMCCM--TAYCFIKRKMKLNVVDNENLFLN 697


>01_06_0693 - 31280108-31281271
          Length = 387

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +2

Query: 188 FVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF-----LYNNEEQR 352
           ++ MDT+  ++R  +++G+  D +A+N  +VK   Q ++  +    F     +Y  E   
Sbjct: 196 YMYMDTVSALFRQMLEEGVPPDTRALNV-LVKGYAQSLHLNDALRVFHQMRPVYGCEPDA 254

Query: 353 LTY 361
           LTY
Sbjct: 255 LTY 257


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 54  TRVPLSL-VCT*MRDSSCTHIILQLSSAMILMDSFYQLLMK 173
           T+ P S  V T +  S+CTH   QLSSA +L     +  +K
Sbjct: 65  TQCPCSFAVATSISSSTCTHFTPQLSSAHLLSSQLKEKELK 105


>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
            24665465-24665887,24665960-24666252,24666332-24666605,
            24666856-24667358,24667464-24667785,24667875-24668220,
            24668339-24668997,24669524-24669625,24669656-24670052,
            24670155-24670270,24670360-24670386
          Length = 1704

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 111  IILQLSSAMILMDSFYQLLMKFIHNSSL 194
            ++  LS A+ +MDS  QL MKF+    L
Sbjct: 1076 LLENLSVAIFVMDSLRQLAMKFLEREEL 1103


>08_02_0484 + 17665714-17666877
          Length = 387

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 347 VLHYCKGKCWNSWRNTHTALPLLQ 276
           +LH   G+ W+  R  H ALPL++
Sbjct: 263 LLHLLTGRQWDGGRLAHWALPLIR 286


>02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,
            5222445-5222793,5223189-5223510,5223621-5224123,
            5224486-5224578,5224708-5224759,5224837-5225129,
            5225208-5225630,5225734-5226070,5226185-5226220,
            5226272-5226589,5227465-5228450
          Length = 1637

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 123  LSSAMILMDSFYQLLMKFIHNSSL 194
            LS A+ +MDS  QL MKF+    L
Sbjct: 1045 LSVAIFVMDSLRQLAMKFLEREEL 1068


>02_01_0125 +
           920128-920392,920491-921839,921921-922084,922340-922370,
           922534-922565,922730-923060,923210-923713
          Length = 891

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 282 KRKSSMCITPTIPTLSFTIMKNRG 353
           K+K S+ +TPT P  +FT ++  G
Sbjct: 855 KKKRSLSLTPTTPLSNFTALEIEG 878


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,505,225
Number of Sequences: 37544
Number of extensions: 176474
Number of successful extensions: 365
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)