Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_C01
         (367 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr...    28   1.8  
AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical...    28   2.4  
U39472-9|AAK31390.2|  327|Caenorhabditis elegans Serpentine rece...    27   5.4  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    26   7.2  
AC024831-2|AAN63422.1|  502|Caenorhabditis elegans Hypothetical ...    26   7.2  
AC024831-1|AAN63421.1|  500|Caenorhabditis elegans Hypothetical ...    26   7.2  
Z81517-7|CAE11306.1|  329|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
           protein C27B7.7 protein.
          Length = 1471

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = +3

Query: 39  TLKPSTRVPLSLVCT*MRDSSCTHIILQLSSAMILMDSFYQLLMKFIHNSSLIWTL 206
           T  P T  PLS+ CT ++  S   ++ +++   + +DS +  ++  +H   +  T+
Sbjct: 256 TADPQTNEPLSITCT-VKSVSKASVLWKVNGIKVSVDSSFYTVVTSVHEDFIESTI 310


>AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical
           protein Y62E10A.16 protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 12  FSTCSTMLKTLKPSTRVPLSLV 77
           F TCS  +KT+K    +PLS+V
Sbjct: 294 FLTCSETIKTVKSDALIPLSIV 315


>U39472-9|AAK31390.2|  327|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 33 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 340 IIVKESVGIVGVIHILLFLFYNSII 266
           ++   SV I+G+I ++LF FY++ +
Sbjct: 228 VVSSISVAILGIIQLVLFCFYDTFL 252


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
 Frame = +3

Query: 72   LVCT*MRDSSCTHIIL------QLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFIALKC 233
            +VC   R SS  H +L       L S  ILM +F+ L + F H+ +++ T +L    L  
Sbjct: 911  IVCARHRMSSFRHSLLFILYASLLYSVTILMSTFFFLPIIFTHSQTIL-TSFLHIPVLFL 969

Query: 234  KTVFFTMQ 257
             T+F + +
Sbjct: 970  GTLFTSFE 977


>AC024831-2|AAN63422.1|  502|Caenorhabditis elegans Hypothetical
           protein Y55F3C.7b protein.
          Length = 502

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +3

Query: 147 DSFYQLLMKFIHNSSLIWTLYLRFIALKCKTVFFTMQRLLIMEL*KRKSSMCITPTIPTL 326
           D  YQ     ++  +L++ L + F+A+ C  V FTM  +L + L +R +      +IP  
Sbjct: 321 DEIYQTECVSVNEFNLLYYLCI-FLAV-CSIVGFTMNIVLALMLKRRSAKKSKRHSIPVE 378

Query: 327 SFTIMKN 347
              I K+
Sbjct: 379 QLQIPKS 385


>AC024831-1|AAN63421.1|  500|Caenorhabditis elegans Hypothetical
           protein Y55F3C.7a protein.
          Length = 500

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +3

Query: 147 DSFYQLLMKFIHNSSLIWTLYLRFIALKCKTVFFTMQRLLIMEL*KRKSSMCITPTIPTL 326
           D  YQ     ++  +L++ L + F+A+ C  V FTM  +L + L +R +      +IP  
Sbjct: 321 DEIYQTECVSVNEFNLLYYLCI-FLAV-CSIVGFTMNIVLALMLKRRSAKKSKRHSIPVE 378

Query: 327 SFTIMKN 347
              I K+
Sbjct: 379 QLQIPKS 385


>Z81517-7|CAE11306.1|  329|Caenorhabditis elegans Hypothetical
           protein F28B1.8 protein.
          Length = 329

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 355 QPLFFIIVKESVGIVGVIHILLFLFYNSII 266
           +P+F + +   V I   I I++FLF N II
Sbjct: 175 RPMFVLSIDIGVPIAEFILIIIFLFSNGII 204


>Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical
           protein F28C6.4b protein.
          Length = 689

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +3

Query: 21  CSTMLKTLKPSTRVPLSLVCT*MRDSSCTHIILQLSSAMILMDSFYQLLMKFIHNSSLIW 200
           C  +L  + P +++ L LV   M        +  +    + M SF+   +  I N SL W
Sbjct: 593 CLPLLLAIVPVSQILLLLVIYNMGKLFSKLNLGSVEFVTLCMSSFFYTFINIIFNISLRW 652

Query: 201 TLYL 212
           T  L
Sbjct: 653 TFEL 656


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,581,308
Number of Sequences: 27780
Number of extensions: 167560
Number of successful extensions: 442
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)