Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B23
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    26   2.0  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   2.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   4.6  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    24   8.0  

>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -2

Query: 225 RAEFPSYGYNSSTKTCELFYYGGCKGNSNRFDTQLAC 115
           R EF    YN  +K   L  +G    N  +F+T   C
Sbjct: 252 RDEFQERLYNDYSKESHLLQHGSHSFNGKQFETSFNC 288


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 210 SYGYNSSTKTCELFYYGGCK 151
           S+GYN+S+   + FYY G K
Sbjct: 60  SFGYNASSSLIDDFYYKGDK 79


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 216  FPSYGYNSSTKTCELFYYGGCKGNSNRFDTQLACEEACNV 97
            FPS+   S ++   L  Y  C+G +N  D        CNV
Sbjct: 959  FPSWVKPSDSEPPPLLVYKWCQGINNLTDVWETSNGECNV 998


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 260  QNVYNRLTKVPAEQSSQVTDIIVQRKRANCSITAAARVTPIDSTLNL 120
            Q ++  L  V AE       ++V++   N +       T +DS LNL
Sbjct: 1724 QKIHKLLFPVCAEMLDMYASLVVEKHTRNHAAWQPVIATILDSILNL 1770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,229,589
Number of Sequences: 5004
Number of extensions: 21680
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)