Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B23
         (358 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303     28   2.5  
08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527     27   3.3  
02_01_0042 + 295608-296222,298479-298925                               27   3.3  
08_01_0843 - 8276619-8278991                                           27   5.7  
09_03_0078 + 12137124-12137672                                         26   7.6  
08_02_1605 - 28166338-28166418,28166496-28166567,28166655-281667...    26   7.6  
02_01_0481 + 3459443-3460303                                           26   7.6  

>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
          Length = 462

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 132 RIDWSYPCSRRNRTVRTFSLNYYIRNLGTLLCRYLCQSVVNILVRVL 272
           R+ W  P + + +T+ T      ++N  TL C     +VV +  RVL
Sbjct: 288 RLIWGPPGTGKTKTISTLLWAMLVKNHRTLTCAPTNTAVVEVASRVL 334


>08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527
          Length = 710

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -2

Query: 216 FPSYGYNSSTKTCELFYYGGCKGNSNRFD 130
           FP  GYN+    C  FY  G KGN   FD
Sbjct: 536 FP-VGYNNPVMFCGKFYCLGRKGNLGAFD 563


>02_01_0042 + 295608-296222,298479-298925
          Length = 353

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 206 TDIIVQRKRANCSITAAARVTPIDSTLNLRVRKPATF 96
           TD+ V R      +TA AR  P +S LNL  R  A F
Sbjct: 100 TDLAVTRGSDLAIVTAGARQIPGESRLNLLQRNVALF 136


>08_01_0843 - 8276619-8278991
          Length = 790

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 231 TCRAEFPSYGYNSSTKTCELFYYGGCKGNSNRFDTQL 121
           +C   F     N ST+ C     GGC GNS   D  L
Sbjct: 317 SCLPGFEFLSANQSTQGCWRAQTGGCTGNSPNGDIGL 353


>09_03_0078 + 12137124-12137672
          Length = 182

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -3

Query: 230 PAEQSSQVTDIIVQRKRANCSITAAARVTPIDSTLNLRVRKPA 102
           P  + ++ T + +Q +RA  +++  A     D+ L +RVR+PA
Sbjct: 89  PPSRRAESTRLFLQLRRAYETLSDPALRVRYDAELMMRVRRPA 131


>08_02_1605 - 28166338-28166418,28166496-28166567,28166655-28166771,
            28166846-28166956,28167077-28167252,28167340-28167421,
            28167662-28167808,28167887-28168252,28168558-28168741,
            28169104-28169213,28169452-28169508,28169589-28169600,
            28169899-28169961,28170010-28170057,28170166-28170246,
            28170326-28170389,28170661-28170686,28170782-28170868,
            28170942-28170969,28171194-28171255,28171364-28171576,
            28171667-28171774,28171948-28172022,28172136-28172249,
            28172597-28172644,28172688-28172767,28172974-28173049,
            28173287-28173427,28173685-28173762,28175100-28175204,
            28177061-28177147,28177287-28178579
          Length = 1463

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 201  YNSSTKTCELFYYGGCKGNSNRFDTQLACEE 109
            ++    TCE FY   C  N+ +    L C+E
Sbjct: 991  HDGQAVTCEDFYAAMCDANNTQLPNFLQCQE 1021


>02_01_0481 + 3459443-3460303
          Length = 286

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 242 LTKVPAEQSSQVTDIIVQRKRANCSITAAARVTPID 135
           L +V AE S +V DIIV+    + +  AAA    ID
Sbjct: 165 LQRVQAEASERVHDIIVEEAMTHYTGAAAAAANLID 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,760,028
Number of Sequences: 37544
Number of extensions: 139662
Number of successful extensions: 343
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)