Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B23
         (358 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   0.62 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   0.82 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   0.82 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   0.82 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   2.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   2.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   2.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   3.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   4.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   7.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 0.62
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 246 PIDKGTCRAEFPSYGY 199
           P+D   C  E  SYGY
Sbjct: 169 PLDSQNCTVEIESYGY 184


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 300 IVHTVICSVKEPAPECLQ--PIDKGTCRAEFPSYGY 199
           I  ++  ++    P  LQ  P+D+  C  E  S+GY
Sbjct: 126 ITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 161


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 300 IVHTVICSVKEPAPECLQ--PIDKGTCRAEFPSYGY 199
           I  ++  ++    P  LQ  P+D+  C  E  S+GY
Sbjct: 126 ITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 161


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 300 IVHTVICSVKEPAPECLQ--PIDKGTCRAEFPSYGY 199
           I  ++  ++    P  LQ  P+D+  C  E  S+GY
Sbjct: 65  ITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 100


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 252 LQPIDKGTCRAEFPSYGYNS 193
           L P+D+  C     SYG+ +
Sbjct: 166 LYPLDRQVCSLRMASYGWTT 185


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 252 LQPIDKGTCRAEFPSYGYNS 193
           L P+D+  C     SYG+ +
Sbjct: 166 LYPLDRQVCSLRMASYGWTT 185


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 300 IVHTVICSVKEPAPECLQ--PIDKGTCRAEFPSYGY 199
           ++++   ++K   P  L+  P+D   C  +F S+GY
Sbjct: 118 VLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGSFGY 153


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 246 PIDKGTCRAEFPSYGYNSSTKTCELF 169
           P D+ TC  +F S+ +N    +  L+
Sbjct: 159 PFDQQTCIMKFGSWTFNGDQVSLALY 184


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 246 PIDKGTCRAEFPSYGYNSST 187
           P D+ TC  +F S+ Y+  T
Sbjct: 153 PFDEQTCFMKFGSWTYDGYT 172


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 231 TCRAEFPSYGYNSSTKTCELFYYG 160
           TC     S+GYN   K  ++ +YG
Sbjct: 233 TCDICGKSFGYNHVLKLHQVAHYG 256


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 99  RCRLPHTQVECRIDWSYP 152
           +C +P   +   I WSYP
Sbjct: 604 QCIVPTGDLPLNIRWSYP 621


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 246 PIDKGTCRAEFPSYGYNSS 190
           P D+ +C  +F S+ YN +
Sbjct: 166 PFDEQSCIMKFGSWTYNGA 184


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 156 SRRNRTVRTFSLNYYIRNLGTLLCRYLCQ 242
           SRRN      SL +    L  LL R LC+
Sbjct: 54  SRRNGRHNVHSLAFGAIQLRQLLKRQLCE 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,878
Number of Sequences: 438
Number of extensions: 1561
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)