Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B15
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   1.7  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   3.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.1  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    26   5.1  
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    26   5.1  

>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 288 KINNLINYFCTYYHYIYSKILLSII 362
           + ++L  Y  TYY YI+  +L S+I
Sbjct: 672 QFSHLYGYSATYYSYIFDTVLASLI 696


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 478  FLFQLSIHTATKRNEDI*LSRELILKQ-INVIYLVSR 371
            +L  LSIH    RN D  L   LILK  +++IYL  R
Sbjct: 1152 YLPLLSIHLLISRNHDPYLMLNLILKHYLSMIYLQFR 1188


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 288 KINNLINYFCTYYHYIYSKILLSIITVYLETKYITFIC 401
           +IN+++N+F  + H +     L+    +LE  Y  F C
Sbjct: 789 EINSILNFFFCFLHTVEPSGKLTFELAFLEIFYELFNC 826


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 145 KYSASLILNYVQKNNINGDKLKYQFCCIXFVRI 47
           K   S +LN ++ N I  D L+Y++C     R+
Sbjct: 113 KSVGSNVLNVLRSNPIYDDDLRYEYCSNSKARV 145


>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
 Frame = +3

Query: 291 INNLINYFCTYYHYIYSKILLSIITVYLETKYITFICFKINSLLSYISSFLFVAV*IDSW 470
           I  LINY  T+Y+ + +   L+ I V +E       C++   LL      LF  +  D +
Sbjct: 125 IQGLINYLDTFYNDLEAWAELADIYVSVEAFESAIFCYEEMVLLQPFEPRLFARL-GDLY 183

Query: 471 ---NKNNCLKHCVKVR-LLRERSLCEEMYCNAIVVVWFTILKVC 590
               ++N   +   ++   R   +CEE +       WF I K C
Sbjct: 184 FVLAQSNATNYWFSLKHYCRSVEICEEYFHG-----WFGISKCC 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,577
Number of Sequences: 5004
Number of extensions: 38701
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)