Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B15
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0757 - 5827536-5827751,5828016-5828159                           29   3.9  
08_01_0610 - 5367271-5367312,5367737-5367805,5368208-5368360,536...    28   6.9  

>07_01_0757 - 5827536-5827751,5828016-5828159
          Length = 119

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 345 ILLSIITVYLETKYITFICFKINSLLSYISSFLFVAV*IDSW 470
           +L SI TV +    IT++C  I+  LS I +  F+ V +  W
Sbjct: 49  VLFSIFTVAM---VITYVCLVIHDDLSLIQTLFFLVVWVIQW 87


>08_01_0610 -
           5367271-5367312,5367737-5367805,5368208-5368360,
           5368441-5368548,5368689-5368736,5368868-5369083,
           5369195-5369259,5369478-5369602,5369675-5369793
          Length = 314

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 483 CLKHCVKVRLLRERSLCEEMYCNAIV 560
           C   C  ++LLR+R + EE Y NA +
Sbjct: 41  CYTECFGMKLLRKRDVPEEKYTNAFL 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,429,236
Number of Sequences: 37544
Number of extensions: 179779
Number of successful extensions: 354
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)