Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B15
         (620 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    31   3.3  
AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens ...    30   5.7  

>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
 Frame = +3

Query: 267 YIYYHFNKINNLINYFCTYYH-YIYSKILLSIITVYLETKYITFICFKINSLL---SYIS 434
           ++Y H +    +  + CT+ H Y+YS   +  I +Y+      +IC  I + +    YI 
Sbjct: 46  HMYIHMHAYAYICIFICTHMHTYVYSYTRI-CIHMYVHIHAYAYICIFIYTHMHTYMYIH 104

Query: 435 SFLFVAV*IDSWNKNNCLKHCVKVRLLRERSLCEEMY-CNAIVVVWFTI 578
              +  + + S+ +  C+  C+ +       +C  MY C  I V   T+
Sbjct: 105 MHAYAYIYVYSYTR-ICIHICIFICTHMHTYMCIHMYTCIHICVFMCTM 152


>AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44225 fis, clone THYMU3006168. ).
          Length = 262

 Score = 30.3 bits (65), Expect = 5.7
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 267 YIYYHFNKINNLINYFCTYYH-YIYSKILLSIITVYLETKYITFIC-FKINSLLSYISSF 440
           Y+Y H +    +  + CT+ H Y+YS   +  I +Y+      +IC F    + +Y+ S+
Sbjct: 66  YMYIHMHAYAYMCVFICTHMHTYVYSYARV-CIHMYIHIHAYAYICIFIYTHMHTYVYSY 124

Query: 441 LFVAV 455
             + +
Sbjct: 125 ARICI 129


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,363,702
Number of Sequences: 237096
Number of extensions: 1110163
Number of successful extensions: 1738
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1738
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)