Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B13
         (261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    24   3.8  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    24   3.8  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    23   5.1  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    23   6.7  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    23   8.8  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    23   8.8  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    23   8.8  

>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 161 LQKCL*KTRKFLQDHPVYLFTGRSGSFL 244
           LQKCL  T   +QD  VY+ T    + L
Sbjct: 178 LQKCLASTSVLMQDALVYIGTANMSTRL 205


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 172 LIKNPKIPPGPPSLPVYGA 228
           ++ NP IP G PS  + GA
Sbjct: 234 VMNNPTIPKGTPSTSIEGA 252


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 177 KKPENSSRTTQSTCLRGVLD 236
           +KPEN+  T +S  L  VLD
Sbjct: 166 RKPENNPHTGRSALLHRVLD 185


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 206 PVYLFTGRSGSFLLKNSV 259
           PV +  G SGS+ +KN V
Sbjct: 148 PVLISKGSSGSYFVKNKV 165


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 148 KSGIANISTAVAIIALMS 95
           +SG ANI+TA+A+   +S
Sbjct: 525 RSGCANIATAIAVELFVS 542


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 187 KIPPGPPSLPVYGA 228
           KIPP  P+LPV  A
Sbjct: 109 KIPPHSPTLPVQNA 122


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 10  FLAQNVVSCLYLSYVFITLIIY 75
           F  Q++ +C Y S  F+TL  Y
Sbjct: 767 FKRQDIKTCSYASEWFLTLFAY 788


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 963,650
Number of Sequences: 5004
Number of extensions: 14808
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)