Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B08
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    31   0.030
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    27   0.48 
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    27   0.48 
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    27   0.84 
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    27   0.84 
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   1.5  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    25   1.9  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   3.4  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    24   4.5  
SPAC1002.01 ||SPAC1610.05|conserved fungal protein|Schizosacchar...    24   5.9  
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    23   7.9  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    23   7.9  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 31.5 bits (68), Expect = 0.030
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 8   LATSLLPKIEKKLDAIERRVEKIETRKQRGEPEDESVS-KGVVKDLEALAGDIKR 169
           + T  LP I K    +   + KI  +  R  P++   S  G+V DLEA   DI +
Sbjct: 246 ILTEPLPDISKSCPKLPHLIFKIIEKMTRKNPDERYTSCSGIVNDLEACLDDIDK 300


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 35  EKKLDAIERRVEKIETRKQRGEPEDESVSKGVVKDLEALAGDIKRLE 175
           E  L  IERRV+K +  +   +   E+  K  +KD+  +   IK  E
Sbjct: 33  ELNLKNIERRVKKYDQIESEYKTNIENEKKAFIKDVSQVQQKIKEFE 79


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 35  EKKLDAIERRVEKIETRKQRGEPEDES 115
           +K L+A+E++ ++   +KQR E EDES
Sbjct: 188 KKALNAVEKQFQEETLQKQRFEREDES 214


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 83  RKQR-GEPEDESVSKGVVKDLEALAGDIKRLEDAYSRVASTRGIE 214
           RKQR G       SKG+ K +    GD+K L + + +++    +E
Sbjct: 249 RKQRSGRSSSHVASKGINKVVNINPGDVKSLIELFPQLSVEEAVE 293


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 5   ELATSLLPKIEKKLDAIERRVEKIETRKQRGEPEDE 112
           E A   LP+ ++    IE + E+I+  +  GE E+E
Sbjct: 333 EEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEEEE 368


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 14  TSLLPKIEKKLDAIERRVEKIETRKQRGEPEDESVSKGVVKDLEAL 151
           T L  KI K+ + +E+   KIE   +  E E+E  + G+V   E L
Sbjct: 40  TFLFEKIMKEGNELEK-YSKIELNSEIWEDEEEEDNSGIVSQNERL 84


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +2

Query: 5   ELATSLLPKIEKKLDAIERRVEKIETRKQRGEPEDESVSKGVVKDLEALAGDIKRLEDAY 184
           E  TS   K +  L  +E  +E +       +P DES+ + V    + L   I+ L++A+
Sbjct: 124 ESMTSDFKKFQSLLKTLETDIEGLNLVDHTHDPSDESIKQTV----QRLRSSIEGLDEAF 179


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 74  IETRKQRGEPEDESVSKGV 130
           +E +KQ+ + EDE + KGV
Sbjct: 51  LEVQKQKEDEEDEEILKGV 69


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 53  IERRVEKIETRKQRGEPED 109
           IE+RVE ++T  QR +P D
Sbjct: 737 IEKRVETLKTLLQRTKPRD 755


>SPAC1002.01 ||SPAC1610.05|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -2

Query: 211 YTSRGSHTAVSVFQPL--DIPCERL 143
           Y  +GSH A S+F  L  ++P E++
Sbjct: 121 YLQKGSHVAASIFAKLGYNLPLEKV 145


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +2

Query: 47  DAIERRVEKIETRKQRGEPEDESVSKGVVKDLEALAGDIKRLEDAYSRV 193
           +A +  +E+IE    RGEP D       V DL  +   + R      RV
Sbjct: 45  EAFKNTIEEIERAAVRGEPADSDAF--FVADLNGVYRQLLRWHAKLPRV 91


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 29  KIEKKLDAIERRVEKIETRKQRGEPEDESVSKGV 130
           K  +K +A + R +  E +K+  E EDE  SKGV
Sbjct: 6   KRAEKAEAAKSRKQDEEKKKKDAE-EDEKWSKGV 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 784,974
Number of Sequences: 5004
Number of extensions: 9130
Number of successful extensions: 51
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)