Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B07
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   4.4  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    24   7.8  
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    24   7.8  

>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 173 TAVSSVKARSFH*RGYQRQNTQKTKWPASSWKLVRVTRSSALGP*APMIPSRKPS 337
           +A  +V+  S   R     NTQ+    A+S   VRV  S A+ P +    +R PS
Sbjct: 284 SAAQTVRPGSRIFRENSASNTQRPNVSATSNSTVRVASSLAVRPVSRNAQARTPS 338


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 324 EGIIGAYGPSADDLVTLTSFQEDAGH 247
           EGI    G +   + T TS Q ++GH
Sbjct: 117 EGISSTTGSTFQSMTTFTSSQTNSGH 142


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 160 RRWYCLNISSVPWDHV 113
           RRW   N+ S+PW HV
Sbjct: 59  RRW---NLQSLPWQHV 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,489,441
Number of Sequences: 5004
Number of extensions: 27878
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)