Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_B07
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0416 + 2965761-2965809,2965995-2966172,2966256-2966327,296... 31 0.33
04_03_0118 - 11474060-11475298 28 1.8
06_03_1220 - 28505306-28508497 27 4.0
05_02_0156 + 7163756-7163834,7165447-7166225 27 4.0
12_01_0386 + 3023431-3023522,3023951-3024097,3024227-3024308,302... 27 5.3
10_08_0917 - 21550332-21550685,21550726-21550765,21551766-215517... 27 5.3
10_03_0046 + 7357777-7357992 27 5.3
07_03_0730 + 21030123-21030338 27 5.3
01_06_1527 - 38006174-38006815,38006920-38007420 27 5.3
01_06_1064 + 34237919-34238155 27 5.3
08_01_0076 - 540886-541527,542173-542754 26 7.1
08_02_0266 + 15051868-15052286,15052376-15052475,15053540-150535... 26 9.3
07_03_0733 + 21062790-21063639,21063674-21063721,21065428-210654... 26 9.3
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 26 9.3
06_03_1219 - 28491185-28494415 26 9.3
06_01_0368 + 2645007-2645317,2645422-2645509,2648927-2649183,264... 26 9.3
04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648 26 9.3
03_02_1029 - 13488535-13493037 26 9.3
>06_01_0416 +
2965761-2965809,2965995-2966172,2966256-2966327,
2966849-2967137,2967941-2968081,2969011-2969115,
2969354-2969501,2970023-2970075,2970189-2970266,
2970361-2970480,2970779-2970943,2971663-2971797,
2972063-2972182
Length = 550
Score = 30.7 bits (66), Expect = 0.33
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 130 VPWDHVEARARRCSGGVSAGKRHHRCNCYYVSDII 26
VPW + ARR + G+ + HR N Y V D++
Sbjct: 186 VPWMREDLFARRDARGIDKVRSSHRVNAYDVEDMV 220
>04_03_0118 - 11474060-11475298
Length = 412
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 325 RRYHRGLRSKCRRSCHPDE 269
R+YH R C SC+PDE
Sbjct: 304 RKYHAIFRKHCTPSCYPDE 322
>06_03_1220 - 28505306-28508497
Length = 1063
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 268 ARQGDKIVGTWTVSPDDTFSQALKCG 345
+R GD IVG W SPD + CG
Sbjct: 43 SRAGDGIVGEWQRSPDCCTWDGVGCG 68
>05_02_0156 + 7163756-7163834,7165447-7166225
Length = 285
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 310 GLRSKCRRSCHPDELPGGCRPFCLLGVLP 224
G R++ +CH D PG + LGV P
Sbjct: 238 GTRAEALAACHADAAPGVAEAYKRLGVAP 266
>12_01_0386 +
3023431-3023522,3023951-3024097,3024227-3024308,
3024801-3024842,3024930-3024989,3025430-3027109,
3027239-3027340,3027461-3027604,3027704-3027829,
3027933-3028100
Length = 880
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 192 KLGHSIDVVISGKTPRRQNGRHPPGSSSG 278
K HS ++ + PRRQ+ + P SSG
Sbjct: 381 KFPHSAQFIVKMENPRRQSFQDPAAPSSG 409
>10_08_0917 -
21550332-21550685,21550726-21550765,21551766-21551767,
21552094-21552633
Length = 311
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 139 ISSVPWDHVEARARRCSGGVSAG 71
+SS+P DH A A +GG+S G
Sbjct: 206 VSSIPKDHAAAAAVVANGGLSGG 228
>10_03_0046 + 7357777-7357992
Length = 71
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 181 DSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAG 71
D DG+RRW+C S + V R GG G
Sbjct: 23 DGGGDGLRRWWCRPASGRSTERVSGREVGGFGGGEGG 59
>07_03_0730 + 21030123-21030338
Length = 71
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 181 DSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAG 71
D DG+RRW+C S + V R GG G
Sbjct: 23 DGGGDGLRRWWCRPASGRSTERVSGREVGGFGGGEGG 59
>01_06_1527 - 38006174-38006815,38006920-38007420
Length = 380
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 322 RYHRGLRSKCRRSCHPDE 269
RY+ R CR SC+PDE
Sbjct: 273 RYYPLFRRHCRPSCYPDE 290
>01_06_1064 + 34237919-34238155
Length = 78
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 181 DSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAG 71
D DG+RRW+C S + V R GG G
Sbjct: 23 DGGGDGLRRWWCRPASGRSTERVSGREVGGFGGGEGG 59
>08_01_0076 - 540886-541527,542173-542754
Length = 407
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 322 RYHRGLRSKCRRSCHPDE 269
+Y+ R CR SC+PDE
Sbjct: 300 KYYSIFRKHCRPSCYPDE 317
>08_02_0266 +
15051868-15052286,15052376-15052475,15053540-15053581,
15053734-15053930,15055412-15055508,15055604-15055699,
15056395-15056633,15056728-15056811,15056898-15057185,
15057658-15057718,15061093-15061362,15061663-15061722
Length = 650
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 310 GLRSKCRRSCHPDELPGGCRPFC 242
G + +C+RS HP +L G + FC
Sbjct: 253 GCKGECKRSFHP-KLEDGTKSFC 274
>07_03_0733 +
21062790-21063639,21063674-21063721,21065428-21065478,
21065559-21065695,21065781-21065997,21066390-21066627,
21066720-21066870,21066990-21067334
Length = 678
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 283 CHPDELPGGCRPFCLLGVL 227
C PD P GCR CL G++
Sbjct: 198 CTPDMSPAGCRS-CLAGII 215
>07_03_0471 +
18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 208 LTWLSAAKHPEDKMAGILLEARQGDKIVGTWTVSPDDTFSQALKCG 345
L+WL ++++ + A+Q +K+ W +PD + K G
Sbjct: 282 LSWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPG 327
>06_03_1219 - 28491185-28494415
Length = 1076
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 277 GDKIVGTWTVSPDDTFSQALKCGE 348
GD IVG W SPD + CG+
Sbjct: 47 GDGIVGEWQRSPDCCTWDGVGCGD 70
>06_01_0368 +
2645007-2645317,2645422-2645509,2648927-2649183,
2649453-2649504,2649527-2649838
Length = 339
Score = 25.8 bits (54), Expect = 9.3
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -3
Query: 238 LGVLPLITTSME*PSFHRADSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAGK 68
LG P + T + PS D+ + C+ S DHV A+ARR G AG+
Sbjct: 284 LGGAPPVQTQDQPPSTPPPDTRATRAVPSDCITYSQ---DHVRAQARRTKRGRGAGQ 337
>04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648
Length = 857
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 234 PRRQNGRHPPGSSSG*QD 287
PRRQ G+ PP S++G +D
Sbjct: 634 PRRQQGQAPPRSNNGGKD 651
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 234 PRRQNGRHPPGSSSG*QD 287
PRRQ G+ PP S++G +D
Sbjct: 353 PRRQQGQAPPRSNNGGKD 370
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,411,023
Number of Sequences: 37544
Number of extensions: 243945
Number of successful extensions: 656
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -