Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B06
         (117 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy...    23   4.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    23   4.2  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    23   5.6  

>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 101 QDSVRLLCSCDCT*LRPSTKMQSSYLPLKP 12
           Q   RLL S D   +RP+ +  SSY+P +P
Sbjct: 123 QQQQRLLRSKDPK-VRPARRAASSYVPSRP 151


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 86   LLCSCDCT*LRPSTKMQSSYLPLK 15
            L C  DC     ST MQ SYL  K
Sbjct: 1078 LRCLLDCCVKYASTNMQISYLAAK 1101


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
            Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 58   NYVQSHEHNKRTESCGGTRL 117
            +Y+Q  EH K T S G T++
Sbjct: 976  SYMQDMEHKKNTHSGGETQV 995


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 521,320
Number of Sequences: 5004
Number of extensions: 5616
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 43080638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)