Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B06
         (117 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765...    55   7e-09
06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831...    53   4e-08
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472...    25   8.6  

>02_04_0064 -
           19375497-19375580,19375659-19375733,19376359-19376514,
           19377016-19377093,19377328-19377428,19377570-19377717,
           19378172-19378316,19378803-19378906,19380257-19380385,
           19380526-19380636,19380734-19380863,19381915-19382034,
           19382360-19382481,19382965-19383048,19383241-19383357,
           19383442-19383522,19384138-19384197,19384398-19384440,
           19384528-19384626,19385353-19385564,19385964-19386091,
           19386246-19386396
          Length = 825

 Score = 55.2 bits (127), Expect = 7e-09
 Identities = 24/38 (63%), Positives = 28/38 (73%)
 Frame = +2

Query: 2   SHDQALVGDKTIAFWLMDATMYSHMSTISEPSPVVERG 115
           SHDQALVGDKTIAFWLMD  MY  M+     +P ++RG
Sbjct: 594 SHDQALVGDKTIAFWLMDKDMYDFMALDRPATPSIDRG 631


>06_03_1473 -
           30382528-30382731,30382814-30382930,30383048-30383129,
           30383211-30383278,30383444-30383545,30383994-30384122,
           30384561-30384623,30384781-30384897,30385210-30386116,
           30386225-30386494,30386929-30386998,30387114-30387273
          Length = 762

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = +2

Query: 2   SHDQALVGDKTIAFWLMDATMYSHMSTISEPSPVVERG 115
           SHDQ++VGDKTIAF LMD  MY+ MS +   SP + RG
Sbjct: 466 SHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTINRG 503


>07_03_0378 +
           17446311-17446514,17446814-17446927,17447124-17447242,
           17447595-17447641,17447720-17447820,17450769-17450840,
           17451290-17451403,17451495-17451500,17451501-17451611
          Length = 295

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -3

Query: 88  AYC--AHVTVHSCVHQPKCNRL 29
           AYC  AH TVH   H+ +C RL
Sbjct: 61  AYCSRAHQTVHWGFHKEECARL 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,739,231
Number of Sequences: 37544
Number of extensions: 43697
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 14,793,348
effective HSP length: 19
effective length of database: 14,080,012
effective search space used: 267520228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)