Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B06
         (117 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35663-6|CAD82917.1|  606|Caenorhabditis elegans Hypothetical pr...    62   5e-11
Z35663-5|CAA84727.1|  681|Caenorhabditis elegans Hypothetical pr...    62   5e-11
AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical...    25   9.9  
AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical ...    25   9.9  

>Z35663-6|CAD82917.1|  606|Caenorhabditis elegans Hypothetical
           protein T04A8.7b protein.
          Length = 606

 Score = 62.1 bits (144), Expect = 5e-11
 Identities = 27/38 (71%), Positives = 31/38 (81%)
 Frame = +2

Query: 2   SHDQALVGDKTIAFWLMDATMYSHMSTISEPSPVVERG 115
           SHDQALVGDKTIAFWLMD  MY  MST S  +P+++RG
Sbjct: 385 SHDQALVGDKTIAFWLMDKEMYDFMSTDSPLTPIIDRG 422


>Z35663-5|CAA84727.1|  681|Caenorhabditis elegans Hypothetical
           protein T04A8.7a protein.
          Length = 681

 Score = 62.1 bits (144), Expect = 5e-11
 Identities = 27/38 (71%), Positives = 31/38 (81%)
 Frame = +2

Query: 2   SHDQALVGDKTIAFWLMDATMYSHMSTISEPSPVVERG 115
           SHDQALVGDKTIAFWLMD  MY  MST S  +P+++RG
Sbjct: 460 SHDQALVGDKTIAFWLMDKEMYDFMSTDSPLTPIIDRG 497


>AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical
           protein Y51H4A.13 protein.
          Length = 591

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 46  VDGRNYVQSHEHNKRTESCGGT 111
           VDG  + Q H+H +RT     T
Sbjct: 357 VDGGGHQQQHQHQRRTSKHSAT 378


>AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical
           protein Y24D9B.1 protein.
          Length = 550

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 46  VDGRNYVQSHEHNKRTESCGGT 111
           VDG  + Q H+H +RT     T
Sbjct: 357 VDGGGHQQQHQHQRRTSKHSAT 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,441
Number of Sequences: 27780
Number of extensions: 35369
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 12,740,198
effective HSP length: 19
effective length of database: 12,212,378
effective search space used: 232035182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)