Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B05
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   4.6  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   6.1  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   8.0  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +1

Query: 226 LNTSNTNDYIVCIKTFFHLLMENYKISLQINKLLV*QVYSTPSSLWDKIAKHFKQRRSCI 405
           LN ++   Y+  +K  FH   E Y   L I K    Q   TP  +  +++K F    + I
Sbjct: 180 LNVTDALSYLDLVKLQFHQEPEIYNEFLDIMKEFKSQAIETPEVI-TRVSKLFAGYPNLI 238

Query: 406 TRY-AILPGGFA 438
             +   LP G++
Sbjct: 239 QGFNTFLPPGYS 250


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 265 KTFFHLLMENYKISLQINKLLV 330
           +T +HL+ + Y++SL+  +LL+
Sbjct: 680 ETLYHLIYDRYRVSLESARLLL 701



 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 307  LQINKLLV*QVYSTPSSLWDKIAKHFKQR 393
            +Q+N +L+     T S + +++A H+KQ+
Sbjct: 2655 VQLNSILLENARGTLSEMANRVASHYKQQ 2683


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 248 SLVLLVFRISCNSVGNYLFKGCFKSGT 168
           S++  +  +  N  GN+L + CF+ GT
Sbjct: 397 SIISQIHPLMLNRFGNFLVQRCFEHGT 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,521
Number of Sequences: 5004
Number of extensions: 53020
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)