Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_B05
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0072 - 502785-504038 31 0.88
05_04_0019 + 17197271-17197445,17197937-17198067,17198129-171981... 29 2.7
12_02_1225 - 27164595-27164842,27164959-27165133,27165213-271653... 29 3.5
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032... 29 3.5
11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634 28 6.2
05_06_0111 + 25646878-25647279 28 6.2
09_04_0702 - 19587943-19588168,19588423-19588525,19588809-195889... 27 8.2
03_06_0728 + 35768830-35769324,35769404-35769462,35770440-357705... 27 8.2
02_04_0335 + 22117902-22119869 27 8.2
02_02_0572 + 11667455-11670783,11672026-11672419 27 8.2
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351... 27 8.2
>02_01_0072 - 502785-504038
Length = 417
Score = 30.7 bits (66), Expect = 0.88
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 432 VRCRGRRGACESHPVSPPSQMQRTAPGGFSGYLRALHARVSPHW 563
V C+ R A + PV+PP Q+Q AP + AL R++ W
Sbjct: 246 VPCQDRSSAATNPPVAPPKQVQWAAP------MCALQERIADEW 283
>05_04_0019 +
17197271-17197445,17197937-17198067,17198129-17198164,
17198196-17198333,17198503-17198601,17198750-17199124
Length = 317
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +1
Query: 409 RYAILPGGFAAGGDAVLAKATPCRPHPKCSGRPRGVLVGISGRFTP 546
R +I P A A +P P P G G L G++GR P
Sbjct: 267 RASITPPAACTDSAAAAAADSPVSPEPPRQGAAGGFLCGLTGRANP 312
>12_02_1225 -
27164595-27164842,27164959-27165133,27165213-27165307,
27165391-27165444,27165794-27165868,27165961-27166081,
27166494-27166549,27166698-27166762,27166962-27167050,
27167155-27167812,27168182-27168202,27168777-27168859,
27169081-27169136,27169413-27169619,27170628-27170760
Length = 711
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 436 AAGGDAVLAKATPCRPHPKCSG 501
A GG LA+ T CR H +C+G
Sbjct: 303 AVGGALELARMTGCRAHERCTG 324
>07_03_1546 +
27602598-27602917,27602995-27603052,27603130-27603252,
27603896-27603992,27604095-27604131,27604244-27604349,
27604547-27604604,27604705-27604802,27604911-27605030,
27605622-27605667,27606336-27606522,27606747-27607263,
27607361-27607453,27608101-27608286,27608364-27608574,
27609263-27609387,27609518-27609664,27610114-27610236,
27610445-27610799,27611076-27611305,27611785-27611877
Length = 1109
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 427 GGFAAGGDAVLAKATPCRPHPKCSGRPRGVLVGISGR 537
G +AAG A+ A A P P PK P G G G+
Sbjct: 342 GLYAAGDSAIGAPARPRAPAPKWLKCPTGASFGFGGK 378
>11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634
Length = 795
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 504 APGGFSGYLRALHARVSPHWH 566
AP GF GYLRAL + H H
Sbjct: 90 APVGFDGYLRALENHLLSHEH 110
>05_06_0111 + 25646878-25647279
Length = 133
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +1
Query: 283 LMENYKISLQINKLLV*QVYSTPSSLWDKIAKHFKQRRSCITRYAILPGGFAAGGDAVLA 462
L E + ++++N L S SS+ D IA+ Q R+ T ++P + G A +A
Sbjct: 70 LCERFNSTVRLNPKL-----SLASSMRD-IARKSCQHRATATGADVIPSACSGAGAATMA 123
Query: 463 KATPC 477
++T C
Sbjct: 124 RSTSC 128
>09_04_0702 -
19587943-19588168,19588423-19588525,19588809-19588923,
19589061-19589086,19589178-19589398,19589493-19589608,
19589695-19589953,19590052-19590139,19590236-19590307,
19590401-19590476,19590746-19590809,19591139-19591259,
19592391-19592451,19592682-19592828
Length = 564
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -3
Query: 557 WTHPGVKRPEIPTKTPRGRPLHLGWGRH 474
W PG + PE R H+GW H
Sbjct: 311 WYEPGTQDPEDVAAAARMNDFHIGWYMH 338
>03_06_0728 +
35768830-35769324,35769404-35769462,35770440-35770509,
35770626-35770748,35770836-35770964,35771268-35771717
Length = 441
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -2
Query: 561 SVDSPGREAPGDTH*NPPGPSAAFGMGATRGGFRKHRVAPCSEPTR 424
S D+P R P D PP P+AA A RG + VA S +R
Sbjct: 21 SADNPFRRKPSDDQPAPPAPTAA----APRGKHPEPEVAEPSAKSR 62
>02_04_0335 + 22117902-22119869
Length = 655
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Frame = +3
Query: 423 TWWVRC----RGRRGACESHPVSPPSQMQRTAPGG 515
TW C RGR G C +H SQ +R GG
Sbjct: 518 TWATGCEKFARGRSGLCAAHGTLMASQQRRAGGGG 552
>02_02_0572 + 11667455-11670783,11672026-11672419
Length = 1240
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 422 YLVGSLQGATRCLRKPPRVAPIPNAADGPGGF*WVSPGASRPGESTLARNSSL 580
Y V +L + PP + P++A P PG SRP + ARN L
Sbjct: 73 YFVRTLLTIIHAILPPPSDSRNPSSASQPAAGGSKFPGLSRPDDPDRARNLRL 125
>01_05_0652 -
23934604-23934636,23934783-23934893,23935000-23935188,
23935893-23936012,23936109-23936273,23936638-23936790,
23936867-23936976,23937280-23937397,23938197-23938427,
23938984-23939175,23939661-23939945,23940637-23940686,
23940846-23940921,23941048-23941135,23941689-23941771,
23941883-23942248,23942462-23942476,23942909-23943018,
23943134-23943231,23943961-23944019
Length = 883
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 419 YYLVGSLQGATRCLRKPPRVAPIPNAADGPGGF 517
Y++ +LQ + + +V+ P A D PGGF
Sbjct: 28 YFMKRNLQATAKAFQAEGKVSSDPVAIDAPGGF 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,656,493
Number of Sequences: 37544
Number of extensions: 365541
Number of successful extensions: 1137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -