Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B02
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   6.2  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    25   8.1  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    25   8.1  
SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|c...    25   8.1  

>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 218  LNRISKPYRIYSGFKYTFCY 159
            LNR++KP+    G  Y FC+
Sbjct: 1007 LNRVAKPFNPLLGETYEFCH 1026


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 254 YRNNEAIYIK-KILNRISKPYRIYSGFKYTFCY 159
           Y N + + I  K L   +KPY IY G+ +  CY
Sbjct: 189 YENGKLVEIDGKDLMETAKPYFIYPGYAFV-CY 220


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -2

Query: 425 NRNINTLRHTRPFCKMVRYNMILYLTPIFVLFLMVDT 315
           ++N+  L    PF   + YN I+     F  F ++D+
Sbjct: 107 SKNLPALLQVAPFAPKLAYNFIVPAFQYFFAFFIIDS 143


>SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 116 TKVHDEFVARIISGSPSGGDPRRASFPN 33
           TK  DE    +I+  P   DP+ ASF N
Sbjct: 47  TKYDDEIFEDLINTFPEFKDPKTASFVN 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,687
Number of Sequences: 5004
Number of extensions: 43247
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)