Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B02
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0110 - 11925381-11925737,11925979-11926245,11926344-11926667     29   3.6  
06_01_0956 + 7374273-7374356,7374502-7374963,7375043-7375673,737...    27   8.3  
05_04_0123 + 18210069-18213737                                         27   8.3  

>06_02_0110 - 11925381-11925737,11925979-11926245,11926344-11926667
          Length = 315

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 218 KFFLCKSLHYFCSYNPTNWL 277
           + F C SLH+ CS N  +WL
Sbjct: 87  RLFPCGSLHFVCSSNSLHWL 106


>06_01_0956 +
           7374273-7374356,7374502-7374963,7375043-7375673,
           7375806-7375875,7376208-7376508
          Length = 515

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 70  PQAATLDVPRSPTGEALDVA 11
           P+ + L VP SP+G A+D+A
Sbjct: 293 PRGSALSVPHSPSGAAMDLA 312


>05_04_0123 + 18210069-18213737
          Length = 1222

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 306  RDTRVNHQK*N-KNWRQIQDHIITYHFTKWSGVT 404
            + T + H K N +     +DH++ +HF+ W  +T
Sbjct: 926  KKTLIYHYKENLEGTTDSKDHVLAHHFSSWGSLT 959


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,964,391
Number of Sequences: 37544
Number of extensions: 259398
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)