Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B02
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41530-1|AAA83273.3|  636|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical ...    27   7.4  
AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical...    27   9.8  
AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical...    27   9.8  

>U41530-1|AAA83273.3|  636|Caenorhabditis elegans Hypothetical
           protein SSSD1.1 protein.
          Length = 636

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
 Frame = +2

Query: 230 CKSLH-----YFCSYNPTNWL*DSCRLDANKGYTCQPSKIKQKLASNTRSYYNV 376
           C SLH     YFC YN   W               +PSK  Q LA    +YY +
Sbjct: 394 CTSLHAPDKLYFCGYNELCWTAAEGASSYRIESRTEPSKNFQPLAEVLETYYRL 447


>AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical
           protein T22D1.2 protein.
          Length = 302

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 124 LCVPKFTTNLLPA*SPGPPQAATLDVPRSPTGEALDVA 11
           L  P+F+     +  P PP   T   P  PTGE  D++
Sbjct: 18  LAAPRFSVGETASRRPPPPPKGTGTPPPPPTGEPQDLS 55


>AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical
           protein Y105E8A.26b protein.
          Length = 1133

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 46  ARLGSPPEGDPEIMRATNSS*TLVHIKHCLLTAS 147
           AR GSP E D  ++R ++    +  +KHC+L  S
Sbjct: 584 ARFGSP-ESDGGVIRLSSVDHVIASMKHCVLDIS 616


>AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical
           protein Y105E8A.26a protein.
          Length = 1172

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 46  ARLGSPPEGDPEIMRATNSS*TLVHIKHCLLTAS 147
           AR GSP E D  ++R ++    +  +KHC+L  S
Sbjct: 584 ARFGSP-ESDGGVIRLSSVDHVIASMKHCVLDIS 616


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,609,702
Number of Sequences: 27780
Number of extensions: 252452
Number of successful extensions: 564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)