Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_B02
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   3.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.9  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 339 KNWRQIQDHIITYHFTKWSGV 401
           KN  QI+   IT+ +T W  V
Sbjct: 417 KNMSQIEREAITFQYTDWEEV 437


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 339 KNWRQIQDHIITYHFTKWSGV 401
           KN  QI+   IT+ +T W  V
Sbjct: 417 KNMSQIEREAITFQYTDWEEV 437


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -3

Query: 211 VSVNRTVSILVLNIHF 164
           VS++  V+++VLN+HF
Sbjct: 318 VSISICVTVVVLNVHF 333


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -3

Query: 211 VSVNRTVSILVLNIHF 164
           VS++  V+++VLN+HF
Sbjct: 318 VSISICVTVVVLNVHF 333


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 65  GGDPRRASFPNW 30
           GG P+   +PNW
Sbjct: 104 GGSPKLTPYPNW 115


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 191 IYSGFKYTFCY 159
           IY+ F+ TFCY
Sbjct: 530 IYNWFQNTFCY 540


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,666
Number of Sequences: 438
Number of extensions: 3729
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)