Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_A24
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 269 1e-73
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 148 4e-37
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 135 3e-33
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 109 3e-25
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 78 9e-16
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 75 8e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 70 2e-13
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 42 7e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.077
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.10
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c... 28 0.71
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 1.2
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 2.9
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 2.9
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 26 3.8
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 6.7
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 6.7
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 6.7
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 6.7
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 25 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 269 bits (660), Expect = 1e-73
Identities = 122/131 (93%), Positives = 125/131 (95%)
Frame = +3
Query: 3 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 182
GMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 74
Query: 183 IVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYV 362
IV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YV
Sbjct: 75 IVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYV 134
Query: 363 AXQAVLSLYAS 395
A QAVLSLYAS
Sbjct: 135 AIQAVLSLYAS 145
Score = 70.1 bits (164), Expect = 2e-13
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = +1
Query: 409 GFVLDSGDGVSHTVPIYEGYALPDAILRLDLAGRD 513
G VLDSGDGV+HTVPIYEGYALP AI+RLDLAGRD
Sbjct: 150 GIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRD 184
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 148 bits (359), Expect = 4e-37
Identities = 68/132 (51%), Positives = 92/132 (69%), Gaps = 1/132 (0%)
Frame = +3
Query: 3 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 182
G KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE G
Sbjct: 19 GFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERG 78
Query: 183 IVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 359
I+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET N PA+
Sbjct: 79 IIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALS 138
Query: 360 VAXQAVLSLYAS 395
+ Q VL+LYAS
Sbjct: 139 FSLQPVLALYAS 150
Score = 49.2 bits (112), Expect = 4e-07
Identities = 18/35 (51%), Positives = 29/35 (82%)
Frame = +1
Query: 409 GFVLDSGDGVSHTVPIYEGYALPDAILRLDLAGRD 513
G VL+ GDG++H+VPIY+G+++P AI + ++ GRD
Sbjct: 155 GIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRD 189
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 135 bits (327), Expect = 3e-33
Identities = 64/132 (48%), Positives = 91/132 (68%), Gaps = 2/132 (1%)
Frame = +3
Query: 3 GMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE 176
G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R +L +KYP+E
Sbjct: 13 GFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPME 72
Query: 177 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 356
+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE + +
Sbjct: 73 NGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGV 132
Query: 357 YVAXQAVLSLYA 392
YVA QAVLSLYA
Sbjct: 133 YVAIQAVLSLYA 144
Score = 48.8 bits (111), Expect = 5e-07
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 409 GFVLDSGDGVSHTVPIYEGYALPDAILRLDLAGRD 513
G V+DSGDGV+H VP+YE L + RLD+AGRD
Sbjct: 150 GVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRD 184
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 109 bits (261), Expect = 3e-25
Identities = 63/155 (40%), Positives = 83/155 (53%), Gaps = 24/155 (15%)
Frame = +3
Query: 3 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK--------------D 113
G K G+AG+DAP VFP+++ R G G M K D
Sbjct: 15 GYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLD 73
Query: 114 SYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 290
++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PL
Sbjct: 74 FFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPL 133
Query: 291 NPKANREKMTQIMFETFNTPAMYVAXQAVLSLYAS 395
NP NRE +IMFE+FN +Y+A QAVL+L AS
Sbjct: 134 NPPENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168
Score = 46.8 bits (106), Expect = 2e-06
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1
Query: 409 GFVLDSGDGVSHTVPIYEGYALPDAILRLDLAGRD 513
G V+DSGDGV+H +P+ EGY + +I + LAGRD
Sbjct: 181 GTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRD 215
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 77.8 bits (183), Expect = 9e-16
Identities = 44/128 (34%), Positives = 66/128 (51%)
Frame = +3
Query: 12 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 191
+ GF+G+D P+ V PS G + G + Y+ +S G + +K I +G V
Sbjct: 24 RIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-MEIKNAIRNGWVE 75
Query: 192 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAXQ 371
NWD +W + +L+ P EHP+L+TE NP NR K + MFE+ PA Y+A Q
Sbjct: 76 NWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQ 135
Query: 372 AVLSLYAS 395
+ +AS
Sbjct: 136 ETCAAFAS 143
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 74.5 bits (175), Expect = 8e-15
Identities = 38/127 (29%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Frame = +3
Query: 12 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIV 188
+AG+ G+ P+ VF ++V R R + + + + VG++ + G ++ + P E ++
Sbjct: 37 RAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVI 92
Query: 189 TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAX 368
+NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N P++
Sbjct: 93 SNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGI 151
Query: 369 QAVLSLY 389
+ S Y
Sbjct: 152 DGLFSFY 158
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 382 HCTRPVVPPGFVLDSGDGVSHTVPIYEGYALPDAILRLDLAG 507
H T+P G VL+ G+ SH +P+ G + R+ G
Sbjct: 159 HNTKPS-SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGG 199
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 69.7 bits (163), Expect = 2e-13
Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 4/135 (2%)
Frame = +3
Query: 3 GMC--KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYP 170
G C + G+AG+++P + PS + GV + ++ YV DE Q I + +K
Sbjct: 18 GSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNG 71
Query: 171 IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 350
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + P
Sbjct: 72 KSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVP 131
Query: 351 AMYVAXQAVLSLYAS 395
A Y+ QAV +A+
Sbjct: 132 AFYLTKQAVCVAFAN 146
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 41.5 bits (93), Expect = 7e-05
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +3
Query: 168 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 335
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 336 TFNTPAMYVAXQAVLSLYA 392
P +A + ++ LYA
Sbjct: 172 ECQVPGFTIAYEPLMGLYA 190
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.5 bits (68), Expect = 0.077
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 228 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTP 350
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.10
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 27 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 170
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
catalytic subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 28.3 bits (60), Expect = 0.71
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 RSTQSCSP-KLPSTPKPTERR*HRLCSRPSTHPPCT*LSRPCSHCTRPVVPPGFVLDSGD 432
R +SCS + + KP++ + H +C R P T P S + +P G V +GD
Sbjct: 55 RFARSCSVGDVVVSAKPSDSKQH-VCKRIIGMPGDTIYVDPTSSNKKITIPLGHVWLAGD 113
Query: 433 GVSHTVPIYEGYALPDAILRLDLAGR 510
++H++ +P +++ + R
Sbjct: 114 NIAHSLDSRNYGPVPMGLIKAKVIAR 139
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.5 bits (58), Expect = 1.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 415 VLDSGDGVSHTVPIYEGYALPDAILRLDLAGR 510
V+DSG +H +P+ + A+ R+D+ G+
Sbjct: 160 VIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGK 191
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 270 LLTEAPLNPKANREKMTQIMFETFN 344
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 223 TPSTMSCV*LPRSTQSCSPKLPSTPKPTE 309
TPS S P S+ + SP PSTP T+
Sbjct: 405 TPSKPSTFVRPHSSSTDSPPSPSTPSNTQ 433
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 383 TVRVRSYHRVSCWIPAMVFPTQYPSTRVTPY 475
TV Y + WIP MV+P + T+ TP+
Sbjct: 509 TVNEPIYSKSDGWIPVMVYP--FIDTKQTPF 537
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 149 YPHTQIPHRTRHRHQLGRYGEDLASHLLQ*AACSSRG 259
Y + + PH+ +H LG YG ++ L C +G
Sbjct: 307 YGNPEHPHQRKHAFDLGEYGAGYLTNPLA-LGCDCKG 342
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 264 GAPRELHAAHCRRCDARSSP 205
G PRE HCR C+ P
Sbjct: 52 GIPRESTVNHCRECERYMQP 71
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 6.7
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +1
Query: 424 SGDGVSHTVPIYEGYALPDAI 486
+G G+ H + + +GYA+P ++
Sbjct: 157 AGRGIGHQIMVEQGYAMPGSM 177
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 87 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 173
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 8.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 214 SGITPSTMSCV*LPRSTQSCSPKLPSTPKPT 306
S T S +S + R ++S LPSTP PT
Sbjct: 399 SSTTCSNLSSPHIKRKSRSPPQSLPSTPFPT 429
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,390
Number of Sequences: 5004
Number of extensions: 49951
Number of successful extensions: 146
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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