Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_A19
         (265 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   3.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   3.4  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    20   5.9  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    20   5.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    19   7.8  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    19   7.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    19   7.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    19   7.8  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    19   7.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 193 VLWASGIVRYYAGKAEQI 246
           + WA G+ R+Y G  + I
Sbjct: 466 ISWAFGVNRFYDGIRDMI 483


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 193 VLWASGIVRYYAGKAEQI 246
           + WA G+ R+Y G  + I
Sbjct: 519 ISWAFGVNRFYDGIRDMI 536


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 212 IPDAHKTSCSAC 177
           +PDA  T C+ C
Sbjct: 64  LPDALSTGCNKC 75


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 212 IPDAHKTSCSAC 177
           +PDA  T C+ C
Sbjct: 64  LPDALSTGCNKC 75


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 42  PSLLRMASPGCFTKRPTAL 98
           P LLRM+ PG    + T L
Sbjct: 304 PCLLRMSRPGKKITKKTIL 322


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 42  PSLLRMASPGCFTKRPTAL 98
           P LLRM+ PG    + T L
Sbjct: 304 PCLLRMSRPGKKITKKTIL 322


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 42  PSLLRMASPGCFTKRPTAL 98
           P LLRM+ PG    + T L
Sbjct: 304 PCLLRMSRPGKKITKKTIL 322


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 42  PSLLRMASPGCFTKRPTAL 98
           P LLRM+ PG    + T L
Sbjct: 304 PCLLRMSRPGKKITKKTIL 322


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 42  PSLLRMASPGCFTKRPTAL 98
           P LLRM+ PG    + T L
Sbjct: 304 PCLLRMSRPGKKITKKTIL 322


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 42  PSLLRMASPGCFTKRPTAL 98
           P LLRM+ PG    + T L
Sbjct: 304 PCLLRMSRPGKKITKKTIL 322


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 212 IPDAHKTSCSAC 177
           +PDA +  CS C
Sbjct: 67  LPDALENECSPC 78


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 42  PSLLRMASPGCFTKRPTAL 98
           P LLRM+ PG    + T L
Sbjct: 372 PCLLRMSRPGKKITKKTIL 390


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 42  PSLLRMASPGCFTKRPTAL 98
           P LLRM+ PG    + T L
Sbjct: 372 PCLLRMSRPGKKITKKTIL 390


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 212 IPDAHKTSCSAC 177
           +PDA +  CS C
Sbjct: 67  LPDALENECSPC 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,162
Number of Sequences: 438
Number of extensions: 1062
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4887441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)