Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_A16
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces...    33   0.017
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    28   0.62 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   1.1  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   2.5  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    26   2.5  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    26   2.5  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   5.8  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   7.7  

>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 33.5 bits (73), Expect = 0.017
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 248 ELDAHINTICLPDAGEVFDDSKNCVAXG---WGKNRFGKDDEFAVVLKKIELDMVEHSRC 418
           ++  H ++  L  +GEV ++ KN    G   W + RFG       +  KI+ D +E +  
Sbjct: 61  DVQVHYDSGKLTISGEVVNERKNESTEGNQRWSERRFGSFSRTITIPAKIDADRIEANFS 120

Query: 419 NDLLRYT 439
           N LL  T
Sbjct: 121 NGLLTVT 127


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 28/87 (32%), Positives = 41/87 (47%)
 Frame = +2

Query: 212 NDIAFLHLALPLELDAHINTICLPDAGEVFDDSKNCVAXGWGKNRFGKDDEFAVVLKKIE 391
           +DI     A+P ELD+ + TI L +    F      V   +  + F + +E   ++KKI 
Sbjct: 2   SDIELHESAIPKELDSPVTTIALYNNHLYFGTEGGDVFL-YNFSNF-QLNESPELVKKIS 59

Query: 392 LDMVEHSRCNDLLRYTELGARYNLHSS 472
           L  V  SR N +L    LGA +  H S
Sbjct: 60  L--VSKSRVNRILAMPFLGAVFIHHGS 84


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
 Frame = -3

Query: 422 HYNGYAPPY----PVQSSLVLPQIHH-PYRND 342
           H N Y PPY    PV     +P  HH PY +D
Sbjct: 185 HNNNYPPPYCFQSPVSPGATVPLQHHSPYPSD 216


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 100 CKSW*VGYKDPDGASPSSGD 159
           C+SW V Y   D ++P+SG+
Sbjct: 459 CQSWLVWYPSEDASNPASGN 478


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 240 NAKWRKAMSFVSFLELK 190
           N+ WR+A SF S+ ELK
Sbjct: 13  NSLWRRAASFTSYSELK 29


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 215 DIAFLHLALPLELDAHINTICLPDAGEVFDDSKNCVAXGWGKNRFGKDDE 364
           D+A LH   P  +D H + +  P  G     + N  + G+  N FG++ +
Sbjct: 63  DVAMLHKK-PSTVDTHDHPLANPPPGCPMHKASNENSTGFFSNLFGREKQ 111


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 85  SYHHQCKSW*VGYKDPDGASPSSGDVFTKDLHSPWFQ-FEKAYK 213
           +Y+  C+ + +G    DGA    G+++  D HS   Q  E  YK
Sbjct: 247 AYNPLCEKFALGSTAQDGAYNRLGNLWIGDFHSETIQSLESHYK 290


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 178  HSPWFQFEKAYK*HRFPPFGVALRTRCAYKHYL 276
            H  W Q + A +  ++PP  + L TR    +++
Sbjct: 1108 HECWAQVKSAVEEKQYPPIDLILNTRSTVDNFV 1140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,764
Number of Sequences: 5004
Number of extensions: 38176
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)