Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_A14
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.1  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      25   5.4  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   7.1  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   7.1  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    24   9.4  

>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
 Frame = -1

Query: 255 TTSPVHPHCDGSEEGNPMSLPSS-----WPRLSAAISEATPRSCFT 133
           TT PVHPH   + E   +S  S      +P  +  +S    RS  T
Sbjct: 495 TTEPVHPHAVTTNEPTDVSTKSKSAAYHYPATTETVSSKAARSATT 540


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 228 DGSEEGNPMSLPSSWPRLSAAISE 157
           D  EEG+ +S+PSS  R+S  + E
Sbjct: 143 DADEEGSEISVPSSPKRMSFNLKE 166


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 289 NLSSSASPREANDVASTSSLRR 224
           NLS+SA  +   DV +TS LRR
Sbjct: 191 NLSTSAKMQFITDVETTSGLRR 212


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3

Query: 289 NLSSSASPREANDVASTSSLRRFRGRKSDEPSLELAALERRDQRSDSALLL 137
           NL    SP   N V   +++      ++ + +LEL+ LERR   S   LL+
Sbjct: 601 NLQLLTSPIVTNQVLKETAISFVGAIETVDKALELSNLERRWPLSTEELLI 651


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 372 RDLIQDLLDMALKHSIPEHGD 434
           RDLI+ LL+   KH +  HGD
Sbjct: 497 RDLIKLLLNRNPKHRLGAHGD 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,261,725
Number of Sequences: 5004
Number of extensions: 18919
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)