Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_A12
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    28   0.82 
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    26   3.3  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   4.4  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        25   5.8  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    25   5.8  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    25   7.6  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 169 QKYIVTSDKLSVLYKHQH-SMYTHAYTHKHIHTHAHAY 59
           QK   T+D     ++H H +   H + H H H H H Y
Sbjct: 517 QKMGYTNDDHVSQHEHTHENSQEHHHEHNHNHDHIHKY 554


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 311 FK*WSS*LVLRVHAVSHRIVSHRMHSYTDVSHRTENTSIILCIMKVLSKIH 159
           +K W S L LRV  V H        ++  V+   E + I+L  M V+ K++
Sbjct: 65  YKIWKSYLELRVAHVEHLNPYFHAEAFASVNDCFERSLILLHKMPVIWKLY 115


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 163 YIVTSDKLSVLYKHQHSMYTHAYTHKH 83
           Y+  ++ L  L +   S+Y H Y+ KH
Sbjct: 406 YVYANESLLQLLQSSQSLYAHLYSLKH 432


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 397 LTSPQTHTHTPPDSPKPN 450
           L+S  +H + PP  P PN
Sbjct: 70  LSSANSHAYAPPSGPPPN 87


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 211 LKILRLSCVL*KYYQKYIVTSDKLSVLYKHQHSMYTHAYTH 89
           LK L   C+  + Y   I  S++L  +     S+Y  AY+H
Sbjct: 5   LKCLIWYCIDNQNYDNSIFYSERLHAIEDSNESLYLLAYSH 45


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 206 NTSIILCIMKVLSKIHCNIR*TICSIQT 123
           N   ++ + ++  ++HCN + TIC + T
Sbjct: 57  NNITVVGLNRLYPQVHCNTQQTICQMTT 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,621
Number of Sequences: 5004
Number of extensions: 31231
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)