Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_A11
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    28   0.47 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   1.9  
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    26   1.9  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    25   2.5  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    25   3.3  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    25   4.4  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   4.4  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    25   4.4  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    24   5.8  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    24   5.8  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    24   5.8  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    24   5.8  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   5.8  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    24   7.6  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    24   7.6  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    24   7.6  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    24   7.6  

>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 27.9 bits (59), Expect = 0.47
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 111 EKHREWSHRATANDISSPRRKHLADPPDHNKLVAMARYVLHNSDWA 248
           E+  + +H+ T  + S P   ++ +PPD +  +  A    HN D A
Sbjct: 224 ERGSQQAHQTTPQNHSLPHPPNMFEPPDEDHQLPSAANNSHNHDHA 269


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = -3

Query: 340 VELARDPSTTDFTLENGNPSIAGNTEIVANEAQSELCRTYLAIATNLLWSGGSAKCFRRG 161
           V+   +    D     GNP I  N +   +  +  L +  L    +L+ SGGS    R  
Sbjct: 463 VQYELEAGLQDIKSGKGNPEIVLNMDYAISYDRYFLLKNLLKFVLHLIQSGGSVVELRNL 522

Query: 160 EDISL 146
            D SL
Sbjct: 523 IDSSL 527


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 209 NQFIVVRRIGQMLPTWGRYIVSCGS 135
           N+ IV++ + ++L T GR++  CG+
Sbjct: 115 NRPIVMKGVSRVLRTKGRFVAECGA 139


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 156 SSPRRKHLADPPDHNKLVAMARYVLHNSDWASL 254
           SS   +H+ DP   N +++ +R  + +S W S+
Sbjct: 609 SSFAERHIIDPEKRNFVISGSRLSVDSSPWISI 641


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 96  KGDRYEKHREWSHRATANDISSPRRKHLADPPDHNK 203
           K   YEK     H  +A+D + P +  L +PP   K
Sbjct: 346 KRSDYEKPFAEPHLNSASDSAEPNQNSLPNPPTETK 381


>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
 Frame = +3

Query: 66  ALNVYADGKWKGDRYEKHREWS----HRATANDISSPRR---KHLADPPDHNKLVA 212
           +LNV A   W      K ++WS      +   +I +P +    HLA   D N +V+
Sbjct: 21  SLNVVAGNLWSASGDSKIKKWSIGDAEHSLVEEIDTPHKLGVHHLATSLDENVVVS 76


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +3

Query: 45  ILFISLCALNVYADGKWKGDRYEKH---REWSHRATA 146
           +L +++CA+ +     W+ D+Y+K+    +W +RA+A
Sbjct: 237 VLVLAMCAVAIRF---WQTDKYDKNELFEQWFNRASA 270


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 330 QGIHRRLILH*KMGIPR*PATLKSSLMKPSQNYAERISPLQPIYCGPEDRP 178
           +G  R  I+   MG+   P    S L +PS+   E I  L+P++   E RP
Sbjct: 186 KGQCRVWIITTNMGVESVPTCRHSKLGEPSKTIQEVIEALKPLF---EKRP 233


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 216 ARYVLHNSDWASLATISVL 272
           ARY L N  W+ ++T+ VL
Sbjct: 605 ARYTLWNGQWSLISTLFVL 623


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 340 VELARDPSTTDFTLENGNPSIAGNTE 263
           + + R  STT F+  N  P++ GN +
Sbjct: 87  IPITRSYSTTFFSKTNDQPTVTGNQD 112


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 222 YVLHNSDWASLATISVLPAIEGFPFSNVKSVVDG 323
           Y LHN DW+     S   A++ +P + + + V G
Sbjct: 161 YFLHNQDWSPKPLFS---ALQVYPLATIFNCVAG 191


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 337 ELARDPS--TTDFTLENGNPSIAGNTEIVANEAQSELCRTY 221
           + A DPS  T+ FT++NGN +       V+N+A      T+
Sbjct: 82  DAAVDPSMFTSTFTVKNGNDANYITASPVSNDASMTAISTF 122


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 210  AMARYVLHNSDWASLATISVLPAIEGF 290
            AM  Y L    WASL + ++   I GF
Sbjct: 994  AMPEYTLRTRIWASLRSQTLYRTISGF 1020


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 78  YADGKWKGDRYEK 116
           Y D KW+G +YEK
Sbjct: 592 YEDVKWEGPQYEK 604


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 117  HREWSHRATANDISSPRRKHLADPPDHNKLV 209
            + E++   TA   SS R   +++ PDH+K V
Sbjct: 1044 YSEFADDTTAQAGSSKRDSAISEDPDHHKSV 1074


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 245 PVRIMQNVSRHCNQFIVVRRIGQMLPTW 162
           P++I+   S+  N + ++  I QM+P W
Sbjct: 248 PLQIIAQFSKTANCYFLLIAIMQMIPGW 275


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 90  KWKGDRYEKHREWSHRATANDISSPRRKHLAD 185
           +WK D + K+          ++    RKHLA+
Sbjct: 78  EWKMDLHRKNERKKREKERKEVELSNRKHLAN 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,427
Number of Sequences: 5004
Number of extensions: 33275
Number of successful extensions: 116
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)