Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_A09
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...    91   3e-20
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    69   1e-13
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    67   7e-13
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    46   1e-06
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    28   0.30 
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    28   0.40 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   0.53 
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     24   5.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    23   8.7  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    23   8.7  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    23   8.7  

>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 91.5 bits (217), Expect = 3e-20
 Identities = 46/100 (46%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
 Frame = +1

Query: 10  AIQDNTKMIWIETPTNPMLKVVDIAAIVKIAKSHG-DIIVAVDNTFLSSYLQRPLDFGVD 186
           A++ +T ++ IE+PTNP + + DI AIVKI +S   D ++ +DNT LS  L  PLDFG D
Sbjct: 135 ALRPDTNLVLIESPTNPRISICDIRAIVKITRSKAKDALLVMDNTMLSPVLCNPLDFGYD 194

Query: 187 IVMYSLTKYMNGHSDVIMGAAIVNDGVIAAKLRFLQNAMG 306
           IV  S TKY++GH D++ G        IA  + F  NAMG
Sbjct: 195 IVYESATKYLSGHHDLMGGVIATKSDEIAKSVFFNINAMG 234


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 69.3 bits (162), Expect = 1e-13
 Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
 Frame = +1

Query: 13  IQDNTKMIWIETPTNPMLKVVDIAAIVKIAKSHGDIIVAVDNTFLSS-YLQRPLDFGVDI 189
           I +NTK +++E+  NPM  V D   I ++A + G + + VDNTF    YL RP+D G DI
Sbjct: 145 IDENTKAVYVESIGNPMYNVPDFERIAEVAHAAG-VPLMVDNTFGGGGYLVRPIDHGADI 203

Query: 190 VMYSLTKYMNGHSDVIMGAAIVNDG 264
           V +S TK++ GH   I G  IV+ G
Sbjct: 204 VTHSATKWIGGHGTTI-GGVIVDSG 227


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 66.9 bits (156), Expect = 7e-13
 Identities = 34/77 (44%), Positives = 46/77 (59%)
 Frame = +1

Query: 31  MIWIETPTNPMLKVVDIAAIVKIAKSHGDIIVAVDNTFLSSYLQRPLDFGVDIVMYSLTK 210
           +IW+ETP NP+    DI    ++AK  G I+V VD+TF    +Q  L  G D V++S TK
Sbjct: 154 VIWLETPLNPLGIAFDIPFYKELAKKKGAILV-VDSTFAPPPIQDALVLGADYVVHSATK 212

Query: 211 YMNGHSDVIMGAAIVND 261
           Y+ GHSDV+ G     D
Sbjct: 213 YLAGHSDVLAGVTASKD 229


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 46.0 bits (104), Expect = 1e-06
 Identities = 26/75 (34%), Positives = 46/75 (61%)
 Frame = +1

Query: 34  IWIETPTNPMLKVVDIAAIVKIAKSHGDIIVAVDNTFLSSYLQRPLDFGVDIVMYSLTKY 213
           ++ E P+NP+L   D+  I K+A S+ D  V VD T + +++   +    D+V+ SLTK 
Sbjct: 371 LFCEFPSNPLLNSPDLVRIRKLADSY-DFAVVVDET-IGNFVNVEVLPLADVVVSSLTKI 428

Query: 214 MNGHSDVIMGAAIVN 258
            +G S+V+ G+ ++N
Sbjct: 429 FSGDSNVMGGSMVLN 443


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 10  AIQDNTKMIWIETPTNPMLKVVDIAAIVKIA 102
           AI + TKMI I TP NP+ K+     + +IA
Sbjct: 173 AITEKTKMIVINTPHNPLGKIFSEEELNEIA 203


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
 Frame = +1

Query: 19  DNTKMIWIETPTNPMLKVV-DIAAIVKIA-KSHGDIIVAVDNTFLSSYLQRPLDFGVDIV 192
           DNT  +W  + + P+L++   +A + ++A    GD +V+   +F +++    +  GV+++
Sbjct: 244 DNTVCLWKASQSTPLLRLEGHLARVGRVAFHPSGDYLVSA--SFDTTWRLWDVHTGVELL 301

Query: 193 MYSLTKYMNGHSDVIMGAAIVNDGVIAA 276
           M        GHS+ I   A   DG + +
Sbjct: 302 M------QEGHSEGIFSIACQPDGSLVS 323


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 70  VVDIAAIVKIAKSHGDIIVAVDNTFLSSYLQRPLDFGVDIVMYSLTKYMNGH 225
           + DIA +  +   HG    A DN  +S++L+  L    D+   S   Y+  H
Sbjct: 829 ITDIARLFGVFLIHGSTHSAEDNEKMSNFLRSFLSLFFDVPYDSFIPYLPTH 880


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 129 SNNYITMTFSYFHYGCYIYY 70
           S+N++TM +    +GC +Y+
Sbjct: 17  SSNHLTMLYGLKRFGCRLYH 36


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 169  LDFGVDIVMYSLTKYMNGHSDVIMGAAIVNDGVIAAKL 282
            L+F    + +SL+ ++  +SD I+   I+   +  AKL
Sbjct: 1155 LEFPYKPIYFSLSDFLKENSDEIILVLILTKNITLAKL 1192


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = -3

Query: 96  FHYGCYIYYFQHGISRCLYPYHLCVILYSFG 4
           F   C+ Y+   GI   LY   +   +  FG
Sbjct: 278 FVVSCFTYFLGDGIEYALYSLFITTTVLGFG 308


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 94  KIAKSHGDIIVAVDNTFLSSYLQRPLDF 177
           K+A +HGD I +  + ++ S   RP DF
Sbjct: 65  KVA-AHGDFISSKGDNYVPSGKMRPADF 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,352,178
Number of Sequences: 5004
Number of extensions: 25942
Number of successful extensions: 93
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)