Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_A07
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    79   3e-16
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S...    69   5e-13
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    52   6e-08
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.0  
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    26   2.6  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    25   7.9  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   7.9  

>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 79.4 bits (187), Expect = 3e-16
 Identities = 39/90 (43%), Positives = 59/90 (65%)
 Frame = +3

Query: 99  KLEDLNLPMTVITRIVKEALPEGVLISKEARTGLAKAASVFVLYVTSAATNIVKNKKRKA 278
           +L+DL LP ++I R+VK  LPE  L+ KEA   +  +A++FV ++TSA+  I  N  RK 
Sbjct: 11  ELDDLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRKI 70

Query: 279 LTGQDVLDAMKDIEFDRFVQPLGESLEQYK 368
           L  QDVL+A+ +IE+  F + L + LE Y+
Sbjct: 71  LMPQDVLNALDEIEYPEFSKTLKKHLEAYE 100


>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 116

 Score = 68.5 bits (160), Expect = 5e-13
 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
 Frame = +3

Query: 93  AEKLEDLNL-PMTVITRIVKEALPEGVLISKEARTGLAKAASVFVLYVTSAATNIVKNKK 269
           A+ L+  NL P+  + RI+K ALPE   ISKEA+  +    S F+ +VT  A+     +K
Sbjct: 3   ADGLDYTNLLPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEK 62

Query: 270 RKALTGQDVLDAMKDIEFDRFVQPLGESLEQYKQ 371
           RK +TG+DVL A+  + F+ + + L  SL +Y++
Sbjct: 63  RKTITGEDVLLALNTLGFENYAEVLKISLTKYRE 96


>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 51.6 bits (118), Expect = 6e-08
 Identities = 22/89 (24%), Positives = 50/89 (56%)
 Frame = +3

Query: 105 EDLNLPMTVITRIVKEALPEGVLISKEARTGLAKAASVFVLYVTSAATNIVKNKKRKALT 284
           ++L+LP   + ++V + LP  +  +KEAR  L +    F+  V+S A  I + + +K + 
Sbjct: 8   DELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIA 67

Query: 285 GQDVLDAMKDIEFDRFVQPLGESLEQYKQ 371
            + ++ A++++EF  ++    E   ++K+
Sbjct: 68  AEHIIKALENLEFKEYIAEALEVAAEHKE 96


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 144 VKEALPEGVLISKEARTGLAKAASVFVLYVTSAAT 248
           +K   PE ++ISKE  T   +AA+     V SA+T
Sbjct: 239 LKPIEPEAIMISKEINTTHDQAAATTTAAVASAST 273


>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +2

Query: 17  KSVLTLCSLAVSL*IVFILSNNKQYGRETGRS--KSPHDSNHENRQRSITGRSFNIERGA 190
           KS LTLC  +     +F  S         G        D N EN+Q+ +   + +I RG+
Sbjct: 113 KSTLTLCETSTGQAELFFQSWPLHSQSVVGEMIHHEQDDYNKENKQQKVVDTTKDISRGS 172

Query: 191 N 193
           N
Sbjct: 173 N 173


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/58 (22%), Positives = 31/58 (53%)
 Frame = +3

Query: 45  RLVYKLFLYYRTINNMAEKLEDLNLPMTVITRIVKEALPEGVLISKEARTGLAKAASV 218
           +LVY  ++    + N   ++ED +L  T I+  +K    + ++  +E+   ++ AA++
Sbjct: 318 KLVYHAYVEQSAVINDLLEIEDASLLKTDISDELKNTFEKQIMNLEESVRAISPAANI 375


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 98  ETGRSKSPHDSNHENRQRSITGRSFNIERGANRPRE 205
           E+G+ KSPH  +H     SITG+S  I   A+ P E
Sbjct: 663 ESGKDKSPHWHSHGG---SITGKS--IVEQASSPLE 693


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,176
Number of Sequences: 5004
Number of extensions: 30130
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)