Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_A07
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.56 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   1.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 196  PVRASFDIKTPSGNASLTILVITVMGRFRSSSFSAILFI 80
            P++ S D+ TP GN    I  +    + R   +S + F+
Sbjct: 1004 PLKISLDVNTPKGNMQWKIWPMKGEEKSRLFHYSVVPFV 1042


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 160 GNASLTILVITVMGRFRSSSFSAILFIVR*YKNN 59
           GN ++ IL  TV+   R S   A+  ++   KNN
Sbjct: 480 GNFTIEILNKTVLAVVRQSEEEAVSLLINFSKNN 513


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 72  YRTINNMAEKLEDLNLPMTVI 134
           +RT ++  E L+DL  P+T I
Sbjct: 274 FRTASSTPEDLQDLEEPLTTI 294


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 231 VTSAATNIVKNKKRKALTGQDVLDAMKDIEFD 326
           VTSAA N  +           V+   K I+FD
Sbjct: 18  VTSAAVNHQRKSANNLAHSMKVIYEWKHIDFD 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,389
Number of Sequences: 438
Number of extensions: 2263
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)