Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_A05
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    32   0.046
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    25   7.0  
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    25   7.0  
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos...    25   9.2  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   9.2  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   9.2  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    25   9.2  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   9.2  

>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 32.3 bits (70), Expect = 0.046
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 9   IAPKFDERNLPWALSEQRKMFVEMDRFVTPLNSGENTITRQSTESSLTIPFEQTFRDLSV 188
           I+PK D+ + P   +         +R +  L   ENT T+  +E S  I FE   +++S+
Sbjct: 114 ISPKEDDVSTPTHEASSSVFLNRHERQLLELVQNENTFTQIISEPSHGITFESWEKEISI 173

Query: 189 QGK 197
            GK
Sbjct: 174 DGK 176


>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 178 SRNVCSNGIVSEDSVDCRVIVFSPEFSGVTNLS 80
           S ++   G+   +    R+ + SPEFSG++ ++
Sbjct: 38  SHHIAMKGVPDTNETHFRLEIVSPEFSGMSRVA 70


>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 154 IVSEDSVDCRVIVFSPEFSGVT 89
           I  +  V CR +V SP F G T
Sbjct: 313 IFEKHGVKCRYLVLSPAFDGAT 334


>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
           Caf16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 180 LSVQGKDAKRAEIEAFNYCGCGWPQHMLV 266
           +SV GKD  R    AF Y G  W  + ++
Sbjct: 61  ISVGGKDPFRESSSAFVYLGTEWVNNPVI 89


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 154 IVSEDSVDCRVIVFSPEFSGVTNLSISTNIFRCSESAHG 38
           I S+   D +  +F     GV  + ++TNI   S + HG
Sbjct: 738 IYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLTVHG 776


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 96  PLNSGENTITRQSTESSLTIPFEQTFRDLSVQGKDAKRAEIE 221
           P+NS + T  +Q       + F + F D  ++GK A++ +++
Sbjct: 673 PMNSEQFTSKKQEEIPVDELFFYRFFNDKYIKGKQARKTKVD 714


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 240 CGWPQHMLVPKGTEAGVVYQLFVMLSNYD 326
           C  P   +VP G   G+V  ++ +LS  D
Sbjct: 354 CNLPPQTIVPVGKYTGIVGTIWCLLSEED 382


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 416  IRVLLVLQTTEHRCFHAR*FLTIRLIDLIEVVV 318
            +RVLL  +T  + CF    +LT+  + ++ V++
Sbjct: 902  LRVLLKRETPNYYCFAQMEYLTVTEVKMLNVLM 934


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,909
Number of Sequences: 5004
Number of extensions: 44410
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)