Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_A05
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0485 + 3728686-3728863,3729933-3730095,3730508-3730549,373... 30 1.0
06_03_0015 + 15431648-15431796,15431878-15432061,15435370-154354... 30 1.0
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 29 3.1
02_05_0728 - 31267653-31267838,31268281-31268627,31268732-312688... 28 4.0
01_06_1358 - 36637369-36637573,36637643-36638119,36638217-366384... 28 4.0
01_01_0492 - 3632812-3633189,3633563-3633709,3633906-3633995,363... 28 5.3
02_05_1051 + 33763485-33763582,33763907-33763978,33764116-337642... 27 7.1
05_05_0062 + 22039410-22039985,22041467-22041555,22041638-220417... 27 9.3
03_06_0317 + 33097257-33097336,33098500-33098926,33100007-331000... 27 9.3
01_05_0281 - 20334578-20334961,20335859-20336005,20336088-203361... 27 9.3
>11_01_0485 +
3728686-3728863,3729933-3730095,3730508-3730549,
3730833-3730927,3731273-3731334,3731416-3731507,
3731587-3731722,3731818-3731904,3732430-3732519,
3732969-3733071,3733616-3733716,3733837-3733971,
3734006-3734093,3734484-3734544,3734626-3734689,
3735219-3735347
Length = 541
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 137 CRLPCDCIFTRVQWCNESVHLNKHLPLFGERPRKV 33
C L CD F WC++ V+ ++H P+ + K+
Sbjct: 349 CGLGCDRAFCGAYWCSQGVNSSQHNPICDQETFKM 383
>06_03_0015 +
15431648-15431796,15431878-15432061,15435370-15435455,
15436863-15436957,15437614-15437689,15438073-15438185,
15439849-15439955,15440227-15440400,15440691-15440915
Length = 402
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 447 DDRMDNP*GDDPGTSCSSNHRT*MLPRKIIPYHQADRPYRSRSWI 313
+DRM GD S N + L +PY AD PY+S W+
Sbjct: 234 EDRMPVILGDKDSISTWLNGASVKLEEITVPYEGADLPYKSIGWL 278
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +1
Query: 208 VRKLRLLTIAAAAGRSTCSCPRVPRRESFIS----SSLCYPTTTSI 333
+R R AAAA RS C+C VPR++ S ++L TT+S+
Sbjct: 855 LRFARGAVAAAAAERSECACHNVPRKKPSTSGRHTAALLAATTSSL 900
>02_05_0728 -
31267653-31267838,31268281-31268627,31268732-31268814,
31269019-31269101
Length = 232
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 48 LSEQRKMFVEMDRFVTPLNSGENTITRQSTESSLTIPFEQTFRDLSV 188
L ++ M +++ R + SGE T+T + +P +Q ++L+V
Sbjct: 92 LDHEKAMELQLQRLPSGRQSGEKTLTFELVSQYFCLPIKQAAQELNV 138
>01_06_1358 -
36637369-36637573,36637643-36638119,36638217-36638446,
36638545-36638677,36638772-36638860,36638959-36639029,
36639116-36639185,36640178-36640300,36640492-36640941
Length = 615
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 190 RAKMLNVRKLRLLTIAAAAGRSTCSCPRVPRRESFISSSLCYPTTTSI 333
R LNVR + I + R CP PR + ++ YP++T I
Sbjct: 413 REMRLNVRHWKEKEINSRERRLQGRCPMTPREVALFLKAMGYPSSTKI 460
>01_01_0492 -
3632812-3633189,3633563-3633709,3633906-3633995,
3634278-3634331,3636434-3636598,3637252-3637488,
3637610-3637696,3637846-3638022
Length = 444
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/65 (26%), Positives = 25/65 (38%)
Frame = +3
Query: 273 GTEAGVVYQLFVMLSNYDFDKVDQPDGKELSCVEASMFCGLKNKKYPDRRPMGYPFDRPS 452
GT V + L Y PDG + CV A + ++ K ++P P +RP
Sbjct: 37 GTTTTVPFHGKDELRRYRKIMAQSPDGDVIDCVPAHLQPAFEHPKLRGQKPEAEPEERPK 96
Query: 453 ATATA 467
A
Sbjct: 97 VGGAA 101
>02_05_1051 +
33763485-33763582,33763907-33763978,33764116-33764202,
33764923-33765001,33765336-33765386
Length = 128
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 232 IAAAAGRSTCSCPRVPRRESFISSSLCYPTTTSIRSISL-MVRNYLAW 372
+A+++G S PRR S S ++ PTTTS +S+ +R + W
Sbjct: 1 MASSSGESPGFQEASPRRASSSSDAMPSPTTTSSSRLSVGFIRTTVKW 48
>05_05_0062 +
22039410-22039985,22041467-22041555,22041638-22041770,
22041864-22042093,22042199-22042675,22042748-22042934,
22043536-22043574,22043624-22044052
Length = 719
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 202 LNVRKLRLLTIAAAAGRSTCSCPRVPRRESFISSSLCYPTTTSI 333
L VR + I + R CP PR + ++ YP+TT I
Sbjct: 371 LKVRHWKEKEINSEEKRLQGGCPMTPREAAVFLKAMGYPSTTKI 414
>03_06_0317 +
33097257-33097336,33098500-33098926,33100007-33100078,
33100490-33100600,33100973-33101173,33102157-33102222
Length = 318
Score = 27.1 bits (57), Expect = 9.3
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 39 PWALSEQRKMFVEMDRFVTPLNSGENTITR-QSTESSLTIPFEQTFRDLSVQGKDAKRAE 215
P+ALS QRK + P +GEN+ + S+ +SLT F T + + +A++ E
Sbjct: 129 PFALSSQRKSHGGNSKAAHPSGNGENSGDKSNSSPASLTKKF-YTKLEEKHKALEAEKNE 187
Query: 216 IEA 224
EA
Sbjct: 188 AEA 190
>01_05_0281 -
20334578-20334961,20335859-20336005,20336088-20336141,
20336391-20336555,20337331-20337855
Length = 424
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 336 VDQPDGKELSCVEASMFCGLKNKKYPDRRPMGYPFDRP 449
++ PDG + CV A + + + +RP+ P +RP
Sbjct: 65 IESPDGDLIDCVAAHLQPAFDHPRLRGQRPLRGPPERP 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,675,322
Number of Sequences: 37544
Number of extensions: 303023
Number of successful extensions: 808
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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