Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_A04
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb... 209 2e-55
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ... 201 8e-53
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 30 0.32
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 3.0
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 4.0
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 26 5.3
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 25 7.0
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 9.2
>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 209 bits (511), Expect = 2e-55
Identities = 104/206 (50%), Positives = 136/206 (66%), Gaps = 1/206 (0%)
Frame = +2
Query: 26 LSDPEEDIHSVVEARLYKHAGEP-ALRLHMARSRNDQSATDTKLWMLASLPSLHKALREL 202
L +EDIH+ E RL + G A +LH RSRNDQ TD +LW+ L + K+L L
Sbjct: 80 LQPSDEDIHTANERRLGEIIGTGIAGKLHTGRSRNDQVTTDMRLWLRDELDIIQKSLVGL 139
Query: 203 IEVLVVRAKNEIDIIFPGYTHLQRAQPIRWSHFLLSHTWFLRDDVXXXXXXXXXXXXCPL 382
++V V RA++++DII PGYTHLQRAQPIRWSHFLLSH + + +D+ PL
Sbjct: 140 LQVFVARAESDLDIIMPGYTHLQRAQPIRWSHFLLSHAFSILNDLDRLKQIYSRVNRLPL 199
Query: 383 GSGALAGCALSIDRKRLAQSLGFDDATPNSMFAVSSRDHLVEFFNWASLCGLHLSRLAED 562
G+GALAG ++DRK L + LGF+ NSM AV+ RD+++EF WAS+ H+SRLAED
Sbjct: 200 GAGALAGNPFAVDRKFLQKELGFEGVIMNSMNAVADRDYVIEFMFWASMVMTHISRLAED 259
Query: 563 LIIYGSQEFGIVRFCDKFSTGSSLMP 640
LIIY + EF V D +STGSS+MP
Sbjct: 260 LIIYSTSEFNFVTLSDAYSTGSSIMP 285
>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 461
Score = 201 bits (490), Expect = 8e-53
Identities = 98/205 (47%), Positives = 128/205 (62%)
Frame = +2
Query: 26 LSDPEEDIHSVVEARLYKHAGEPALRLHMARSRNDQSATDTKLWMLASLPSLHKALRELI 205
L +ED+H+ E RL + G+ A +LH RSRNDQ TD +LW+ + + + L+
Sbjct: 82 LEPSDEDVHTANERRLTEIIGDVAGKLHTGRSRNDQVTTDLRLWLCRKIKEVEVYVINLL 141
Query: 206 EVLVVRAKNEIDIIFPGYTHLQRAQPIRWSHFLLSHTWFLRDDVXXXXXXXXXXXXCPLG 385
+V RA+ EID+I GYTHLQRAQP+RWSHFL+SH L D+ PLG
Sbjct: 142 KVFTNRAEMEIDVIMSGYTHLQRAQPVRWSHFLMSHALPLLGDLGRLRQLYTRVSQLPLG 201
Query: 386 SGALAGCALSIDRKRLAQSLGFDDATPNSMFAVSSRDHLVEFFNWASLCGLHLSRLAEDL 565
+GALAG ++DR+ L + LGF+ NSM AV RD ++EF WA + LH+SR AEDL
Sbjct: 202 AGALAGNPFNVDREFLRKELGFEGIIMNSMNAVGDRDFVIEFMFWAGMVMLHISRFAEDL 261
Query: 566 IIYGSQEFGIVRFCDKFSTGSSLMP 640
IIY S EFG V D +STGSS+MP
Sbjct: 262 IIYSSSEFGFVTLSDAYSTGSSIMP 286
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 29.9 bits (64), Expect = 0.32
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 15/75 (20%)
Frame = +2
Query: 404 CALSIDRKRLAQSLGFDDA-TPNSMFAVSSR--DHL------------VEFFNWASLCGL 538
C + +D+K++ ++L D+ P S+ +SS+ DHL EFF +LC
Sbjct: 646 CKVDLDKKKMLETLSLSDSPNPESITFISSKFVDHLQSNENYIQTEACFEFFKALALCHS 705
Query: 539 HLSRLAEDLIIYGSQ 583
++ + ++ +IY +Q
Sbjct: 706 VVTDVQDETLIYNAQ 720
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 267 RCVYPGKIISISFLARTTKTSINSLSALCRLGNDASI 157
+C+Y ++ S T S+N L A+ R G S+
Sbjct: 289 KCIYMNRVSGESIFVTTAHKSVNGLMAINRKGQVLSV 325
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 44 DIHSVVEARLYKHAGEPALRLHMARSRNDQSATDTKLWMLASLPSL 181
D++SVV AR+ K G+P+ L+ N+ + T + +LPSL
Sbjct: 435 DLNSVVNARVEKSTGQPSTPLNRQHYFNELPHSTTPV----TLPSL 476
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 476 FAVSSRDHLVEFFNWASL 529
FA + RDHL+ F W +L
Sbjct: 350 FAQNKRDHLLRLFTWIAL 367
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 255 PGKIISISFLARTTKTSINSLSALCRLGN 169
P K+ +SF R T T+ SLS + G+
Sbjct: 25 PKKVEGVSFAGRETPTATGSLSVVINAGS 53
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = -2
Query: 486 ETANIELGVASS-KPKL*ASRLR-SIDNAQPAKAPLPSGQRDSR 361
E ++ E+ S +P ++R+R + DNAQ + +P+PS ++ ++
Sbjct: 205 EKSSAEISQTSKQRPSRRSARVRMATDNAQKSPSPIPSPKKTAK 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,633
Number of Sequences: 5004
Number of extensions: 50968
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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