Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_A04
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 170 9e-43
04_04_0546 - 26142562-26142612,26142698-26142794,26142888-261429... 30 1.8
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990... 29 2.4
01_06_0746 - 31636024-31641396 29 3.1
10_06_0112 + 10899079-10900656,10900761-10900920,10900948-109010... 28 7.2
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 28 7.2
03_02_0207 - 6411324-6412895 27 9.5
>03_02_0735 + 10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 170 bits (413), Expect = 9e-43
Identities = 87/200 (43%), Positives = 119/200 (59%)
Frame = +2
Query: 41 EDIHSVVEARLYKHAGEPALRLHMARSRNDQSATDTKLWMLASLPSLHKALRELIEVLVV 220
ED+H +EA L + GEPA +LH ARSRNDQ TD +LW ++ + +++ LV+
Sbjct: 492 EDVHMNIEAALIEKVGEPAKKLHTARSRNDQIVTDLRLWCRDAIDKILFRIKQFQVSLVL 551
Query: 221 RAKNEIDIIFPGYTHLQRAQPIRWSHFLLSHTWFLRDDVXXXXXXXXXXXXCPLGSGALA 400
A +D+I PGYTHLQRAQP+ H LLS+ L D CPLG+ ALA
Sbjct: 552 LASKYVDLIVPGYTHLQRAQPVLLPHLLLSYVEQLERDAGRLVNCRERLNFCPLGACALA 611
Query: 401 GCALSIDRKRLAQSLGFDDATPNSMFAVSSRDHLVEFFNWASLCGLHLSRLAEDLIIYGS 580
G L IDR + A+ L F NS+ AVS RD ++EF S+ +HLSR+ E+ +++ S
Sbjct: 612 GTGLPIDRFKTAKDLKFTAPMKNSIDAVSDRDFVLEFLAANSIAAVHLSRIGEEWVLWAS 671
Query: 581 QEFGIVRFCDKFSTGSSLMP 640
+EFG + D STGSS+MP
Sbjct: 672 EEFGFLTPSDSVSTGSSIMP 691
>04_04_0546 -
26142562-26142612,26142698-26142794,26142888-26142949,
26143258-26143346,26143627-26143735
Length = 135
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -2
Query: 621 VENLSQKRTIPNSWDPYIIRSSANLLRCRPHNEAQLKNSTK*SLE---ETANIELGVASS 451
++ Q +PN D + + AN+L C+P N +L + T+ ++ +T N G+ S
Sbjct: 40 IDRAMQHLLVPN--DRLLDQIEANMLACQPQNNIELFHRTRRNINGLLQTMNQMPGIMSK 97
Query: 450 KPKL 439
P L
Sbjct: 98 MPPL 101
>04_04_0596 -
26497863-26497913,26498010-26498081,26499015-26499093,
26499440-26499553,26499822-26499871,26500353-26500398,
26501100-26501719
Length = 343
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 618 ENLSQKRTIPNSWDPYIIRSSANLLRCRPHNEAQLKNSTK*SLEETANIE 469
+NL +K + NSW Y I ++ RP A L + +LE +N E
Sbjct: 183 KNLGKKAAVTNSWGKYGIIREVDMWNKRPEFTAWLSEVKQVNLEALSNWE 232
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 146 TKLWMLASLPSLHKALRELIEVLVVRAKNEIDII 247
T+ + L LP +HK + L+E L+++ K++I I+
Sbjct: 779 TEEYRLTLLPQIHKYVISLVEQLLLKDKDQIKIV 812
>10_06_0112 +
10899079-10900656,10900761-10900920,10900948-10901028,
10901264-10901517
Length = 690
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = +2
Query: 41 EDIHSVVEARLYK---HAGEP--ALRLHMARSRNDQSATDTKLWMLASLPSLHKALRELI 205
ED+HSV+E+ L++ G P +RL +A R D A + S H + +
Sbjct: 459 EDVHSVIESLLHEPPPSLGMPPELVRLSLAAERTIDQFPDATKRFWADMSSFHSKAKAAL 518
Query: 206 EVLVV 220
E V+
Sbjct: 519 ESYVL 523
>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 27.9 bits (59), Expect = 7.2
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = -2
Query: 618 ENLSQ-KRTIPNSWDPYIIRSSANLLRCRPHNEAQLKNSTK*SLEETANIELGVASSKPK 442
+NL + K + S +P+ + S ++ H+ +N E++ + S+P
Sbjct: 906 QNLKETKSKLTKSEEPFAMTDSKSIKVA--HSNQTSRNLNNELFEDSTPFAVKSGMSEPP 963
Query: 441 L*ASRLRSIDNAQPAKAPLPSGQRDSRLLCSSNLXTSSRRNQ 316
S +++D A+PA + L Q + SS S RR Q
Sbjct: 964 ENRSSEQALDLAEPASSDLAYFQTTAVTSSSSKASGSQRRKQ 1005
>03_02_0207 - 6411324-6412895
Length = 523
Score = 27.5 bits (58), Expect = 9.5
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +2
Query: 110 MARSRNDQSATDTKLWMLASLPSLHKALRELIEVLVVRA-KNEIDIIFPGYTHLQRAQPI 286
+A SA W+L+S P + + +RE EV VRA + + D+ G+ L + +
Sbjct: 318 LAGRETTSSALTWFFWLLSSRPDVERRIRE--EVATVRARRGDGDVDRVGF-DLDELREM 374
Query: 287 RWSHFLLSHTWFLRDDVXXXXXXXXXXXXCPLGSGALAG 403
++ H ++ + L V P G+ AG
Sbjct: 375 QYVHAAITESMRLYPPVPVDSLHAQEDDVLPDGTAVEAG 413
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,598,075
Number of Sequences: 37544
Number of extensions: 324331
Number of successful extensions: 857
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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