Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_A04
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 33  IPKRIFTQL*KQGFINMQGNLL 98
           +PK IFT+L +   +N+ GN L
Sbjct: 300 LPKGIFTRLEQLLVLNLAGNRL 321


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 77  KHAGEPALRLHMARSRNDQSATDTKLWML 163
           K  GE A+  +  R+    +ATD +LW +
Sbjct: 163 KVLGELAILYNCKRTATITAATDCQLWAI 191


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 518 WASLCGLHLSRLAEDLI 568
           + SLCG H  RL  +L+
Sbjct: 47  YESLCGRHEKRLLNELL 63


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 518 WASLCGLHLSRLAEDLI 568
           + SLCG H  RL  +L+
Sbjct: 47  YESLCGRHEKRLLNELL 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,199
Number of Sequences: 438
Number of extensions: 3591
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)