Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0008_A02
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0651 - 23164377-23165969 30 1.4
09_06_0289 - 22053561-22055666,22055745-22055771 29 3.3
08_02_1123 + 24474434-24474538,24474800-24474860,24475050-244754... 29 4.4
11_04_0094 + 13418604-13418680,13419331-13419400,13420078-134202... 28 5.8
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 28 5.8
04_04_1478 - 33882625-33883639,33883725-33883849,33883935-338841... 28 5.8
04_01_0332 + 4378111-4378329,4378862-4378997,4379113-4379165,437... 28 5.8
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983... 28 5.8
01_06_1691 - 39215192-39215283,39215341-39215413,39215874-392166... 28 7.6
>06_03_0651 - 23164377-23165969
Length = 530
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Frame = +1
Query: 112 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFEARRVRWTVEWIAKRLVINNKGLKW 291
N+ GF N+ +L D L+E ++LFE R + W ++++ GL
Sbjct: 178 NVFGF-----NLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISW---TILVSGYGLAG 229
Query: 292 CQIMATR--FKRIYENKELEWISTFSTSWQHQSIWHAFKTFRHIQ 420
Q+ R F + E + W + + QH A FR +Q
Sbjct: 230 -QLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQ 273
>09_06_0289 - 22053561-22055666,22055745-22055771
Length = 710
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 229 VRWTVEWIAKRLVINNKGLKWCQIMATRFKR 321
VRW EW + LV+ + GL+W ++A ++
Sbjct: 40 VRWWDEWQLRILVLGSLGLQWFLLVAAPMRK 70
>08_02_1123 +
24474434-24474538,24474800-24474860,24475050-24475477,
24475915-24476231,24476991-24477216,24477302-24477547,
24477635-24477745,24478051-24478182,24478297-24478325,
24478352-24478502
Length = 601
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -1
Query: 638 LSRSSWDLSTTIMDSPS--HWKKT 573
L SSW + TT+ D PS H+KKT
Sbjct: 551 LISSSWGIDTTVTDDPSHPHFKKT 574
>11_04_0094 +
13418604-13418680,13419331-13419400,13420078-13420236,
13420334-13420445,13420530-13420649,13422249-13422406,
13422987-13423217,13424621-13424713,13425088-13425227,
13426331-13426401,13427554-13427637,13427752-13427846
Length = 469
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 281 ASNGVRSWLLDSNGYTKTKNW-NGYPPSVPLGNINLFGMHSKPSDIY 418
+S+ SW L + K KNW NG ++ +G FG S P DI+
Sbjct: 35 SSSQFYSWCLQTKTQVKVKNWVNGTEGTIVVGLSARFGA-SVPRDIH 80
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 492 FSLFKEDSLPLTDLMKLLDEGKVPLYMSEGFECM 391
F+ FKE+ PLT + L G P + +GF C+
Sbjct: 346 FNSFKENLNPLTVVHNWLGPGVCPKVVEKGFRCI 379
>04_04_1478 -
33882625-33883639,33883725-33883849,33883935-33884144,
33884645-33884650
Length = 451
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -1
Query: 656 ILPLIPLSR--SSWDLSTTIMDSPSHWKKTGINST 558
++PLIPL +S L +D PSH+ TG+++T
Sbjct: 133 LVPLIPLEDDDASDQLEGPTLDLPSHYNITGVSNT 167
>04_01_0332 +
4378111-4378329,4378862-4378997,4379113-4379165,
4379286-4379394,4379467-4379603,4379698-4379894,
4379979-4380128,4380233-4380293,4380380-4380500,
4380901-4380991,4381116-4381209,4381446-4381541,
4382176-4382316,4382592-4382642,4383093-4383161,
4384072-4384142,4384244-4384336,4384820-4384910,
4386164-4386235,4387226-4387351,4387537-4387593,
4387926-4388000,4388570-4388658,4388814-4388891,
4389308-4389446,4389868-4389977,4390151-4390250,
4390548-4390655
Length = 977
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +2
Query: 281 ASNGVRSWLLDSNGYT-KTKNWNGYPPSVP----LGNINLFGMHSKPSDIYNGT 427
++NG R+WL+D N T K +W+ P +I+++ +H + ++ T
Sbjct: 286 SANGTRTWLVDINSETLKPASWDELSDEKPNLESFSDISIYELHIRDFSAHDST 339
>01_06_0496 -
29795490-29796638,29796811-29796870,29798168-29798371,
29798739-29798984,29799375-29799464
Length = 582
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 555 LDWFTHKITPGQDKIVRNSNEFSLFKEDSLPLTDLMKL 442
+D F +T +KI RNS +FS DS+P + L +L
Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315
>01_06_1691 -
39215192-39215283,39215341-39215413,39215874-39216615,
39216730-39217985,39218080-39218187,39218289-39218474,
39218625-39218675
Length = 835
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +2
Query: 365 PLGNINLFGMHSKPSDIYNGTFPSSNNFMRSVNGKESSLKSENSFELRTILSCP 526
P GN F +N F S N+ + S N + S +SEN L CP
Sbjct: 263 PYGNGRAFSRQLSSIQSFNSRFGSFNSRLGSFNCRRSGPRSENMSIPPEELRCP 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,036,009
Number of Sequences: 37544
Number of extensions: 361795
Number of successful extensions: 940
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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