Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0008_A01
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    28   0.86 
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   2.0  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   4.6  
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po...    25   8.0  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   8.0  

>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 328 TKHRYQVKGKHQLLALVEHHDKQLR 402
           T  +YQ + K++L AL+E + KQLR
Sbjct: 842 TSQKYQSELKNELYALLEQYKKQLR 866


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 205 ICSIRSCQ*INSRCFLSAFCILYSC 131
           + SIR+C     +CF  AFC +  C
Sbjct: 225 LVSIRTCMLNAKKCFTDAFCEILRC 249


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 194 PFLSINKFALFSICLLYLIFMQVA 123
           P L ++   LF +C+L  IF+Q +
Sbjct: 425 PILWLSSHVLFGVCMLSTIFLQTS 448


>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 148 KRQIENNANLFIDKNGWNKSQ 210
           K + ENN ++ I+ +G+NK Q
Sbjct: 283 KMEKENNLDIMIEASGFNKKQ 303


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 114 SQSGDLHEYKIQKADRKQREFIY*QERMEQISGREPSRMDPNSE 245
           +Q+  +H+      +  ++  IY +ER+E++  R+      NSE
Sbjct: 32  TQNQTVHQQLHSNIEESKKSIIYLEERLEKLKLRKNGVRKSNSE 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,156
Number of Sequences: 5004
Number of extensions: 38797
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)