Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_P19
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1176 + 10112257-10113126 30 1.1
08_02_0873 + 22100124-22100810 30 1.5
04_04_0310 - 24301274-24301945,24302035-24302365,24302629-243029... 29 2.0
02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236 29 2.0
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 3.5
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698... 28 4.6
03_06_0037 + 31222963-31223886,31225172-31225786 28 4.6
03_01_0549 - 4102098-4102198,4102394-4102544,4102629-4102760,410... 28 4.6
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549... 28 6.1
06_01_0494 + 3539804-3539949,3540466-3540826 28 6.1
03_03_0117 - 14583102-14583186,14585202-14585336,14585440-145856... 28 6.1
07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125 27 8.1
>06_01_1176 + 10112257-10113126
Length = 289
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Frame = +1
Query: 73 PADFCDIHQVVCPPCGGSTQVTSSGACH----PFENPLSLFTLPRGRGGGCGHEISNS 234
P FC + G V G C P P S FT G GGGCGH S S
Sbjct: 53 PRHFCKACRRYWTKGGLLRNVPVGGGCRKPKRPAPPPSSSFTGGGGGGGGCGHRDSKS 110
>08_02_0873 + 22100124-22100810
Length = 228
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 193 RGRGGGCGHEISNSIICKYLRTKCRCGESSG 285
RG GGGC H + + ++R K G +G
Sbjct: 44 RGGGGGCAHAFCRACLAGHVRAKVESGGGAG 74
>04_04_0310 -
24301274-24301945,24302035-24302365,24302629-24302954,
24303039-24303413
Length = 567
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 317 RARRTRLLPACPLLSPHLHFVRKYLHIML 231
RAR RLLP L+ HF+R Y H+++
Sbjct: 302 RARPDRLLPDRALVGMAQHFMRSYSHLLI 330
>02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236
Length = 1096
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Frame = +2
Query: 23 LGGMFGIHFSFIYF---VPIQRISATFTRSSVH----LVGGLPKLRLPVLVTHSRTR*AC 181
+ G+ ++ SF +F VP I +++ L GG+P L+LP+ THS + +
Sbjct: 665 MNGLASLNLSFNHFEGPVPNDGIFLNINETAIEGNEGLCGGIPDLKLPLCSTHSTKKRSL 724
Query: 182 SRCLAGAVAGAV 217
+A +++ +
Sbjct: 725 KLIVAISISSGI 736
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 187 LPRGRGGGCGHEISNSIICKYLRTKCR 267
+PR R GG G ++ S++ + LR CR
Sbjct: 27 IPRDRYGGRGRDLPTSLLVRNLRRDCR 53
>10_07_0144 -
13367579-13368805,13369540-13369578,13369662-13369826,
13370083-13370193
Length = 513
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +1
Query: 196 GRGGGCGHEISNSIICKYLRTKCRCGESSGQAGNRRVRRAR 318
G GG C I K R + RC SS +G R RRAR
Sbjct: 14 GGGGKCKRGKRGKIAAKRRRGQVRCCSSSSSSGGAR-RRAR 53
>03_06_0037 + 31222963-31223886,31225172-31225786
Length = 512
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 296 LPACPLLSPHLHFVRKYLHIMLFDIS*PHPP 204
LPA P++ HLH V+K +H L ++ H P
Sbjct: 43 LPAVPIIG-HLHLVKKPMHATLSRLAARHGP 72
>03_01_0549 -
4102098-4102198,4102394-4102544,4102629-4102760,
4102988-4103162,4103494-4103945,4104042-4104121,
4104342-4104408,4104709-4104814,4104924-4105033,
4105133-4105201,4105661-4105771,4106263-4106427,
4106639-4106725,4106974-4107027,4107101-4107240,
4107820-4107897,4108066-4108720
Length = 910
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 166 NPLSLFTLPRGRGGGCGHEISNSIIC 243
NPL L L GRGGGCG + C
Sbjct: 20 NPLLLRRLRLGRGGGCGKASTAQRFC 45
>11_04_0430 +
17653553-17654285,17654305-17654627,17654795-17654921,
17655123-17655338,17655463-17655494
Length = 476
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 38 GIHFSFIYFVPIQRISATFTRSSVHLVGGLPKLRLPVLVTH 160
G+ F I P+QR T ++ VH+VGG + V + H
Sbjct: 245 GLGFQHIPHQPLQRNKKTTKKALVHVVGGALSVERLVTLLH 285
>06_01_0494 + 3539804-3539949,3540466-3540826
Length = 168
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -2
Query: 368 LVRYKHTKTTSKVCYNPRARRTRLLPACPLLSPHLHFVRKYLHIMLFDIS*PHPPPRPRG 189
L +H+ ++S PR R P C + PHL LH + P PPP P
Sbjct: 41 LALQQHSTSSSSPFSRPRERINEPSPGCSISPPHLS-----LHNAQYP---PPPPPSPSA 92
Query: 188 NVNKLN 171
+ +L+
Sbjct: 93 SAVQLS 98
>03_03_0117 -
14583102-14583186,14585202-14585336,14585440-14585604,
14586168-14586245,14586796-14586941
Length = 202
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 190 PRGRGGGCGHEISNSIICKYLRTKCR 267
PRGR GG ++ S++ + LR CR
Sbjct: 24 PRGRYGGRDRDLPTSLLVRNLRRDCR 49
>07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125
Length = 790
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -2
Query: 320 PRARRTRLLPACPLLSPHLHFVRKYLHIMLFDIS*PHPPP 201
P R LL A PLL+ H H L ++L S P P P
Sbjct: 106 PLLRPLHLLLALPLLASHPHLPTILLPLLLLFPSGPRPHP 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,947,529
Number of Sequences: 37544
Number of extensions: 387754
Number of successful extensions: 1238
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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