Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_P19
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    31   0.59 
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    31   0.59 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    31   0.59 
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    31   0.59 
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    31   0.78 
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z77657-1|CAB01144.1|  130|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.      28   5.5  
AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.      28   5.5  
AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1 suppres...    28   5.5  
Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z29095-3|CAA82355.1|  161|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AC024762-4|AAF59473.1|  161|Caenorhabditis elegans Vacuolar h at...    27   7.2  
AB009566-1|BAA75066.1|  161|Caenorhabditis elegans Vha3 protein ...    27   7.2  
AB000918-1|BAA22596.1|  161|Caenorhabditis elegans VHA-2 protein.      27   7.2  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    27   9.5  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 162 EWVTSTGRRNLGRPPTRWTDDL 97
           EW     +R +GRPP RWTD L
Sbjct: 832 EWRPYGWKRPVGRPPMRWTDSL 853


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 162  EWVTSTGRRNLGRPPTRWTDDL 97
            EW     +R +GRPP RWTD L
Sbjct: 1007 EWRPYGWKRPVGRPPMRWTDSL 1028


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 162 EWVTSTGRRNLGRPPTRWTDDL 97
           EW     +R +GRPP RWTD L
Sbjct: 746 EWRPYGWKRPVGRPPMRWTDSL 767


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 162 EWVTSTGRRNLGRPPTRWTDDL 97
           EW     +R +GRPP RWTD L
Sbjct: 358 EWRPYGWKRPVGRPPMRWTDSL 379


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 156 VTSTGRRNLGRPPTRWTDDLVNVAEIRWMGTKYI 55
           V+   +R +G+PP RWTD L      R MG   I
Sbjct: 9   VSHKKKRPVGKPPMRWTDSLRKEITTRDMGNNII 42


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 162 EWVTSTGRRNLGRPPTRWTDDL 97
           +W     +R +GRPP RW D L
Sbjct: 143 DWCPRDEKRPVGRPPMRWNDSL 164


>Z77657-1|CAB01144.1|  130|Caenorhabditis elegans Hypothetical
           protein F08H9.2 protein.
          Length = 130

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 443 RPIVSSNKFKLVELTRRRDESRAPLLVRYKHTKTTSKVCYNPRARRT 303
           R +VS    +   LTRRR  ++AP   R   +++ S+     ++R T
Sbjct: 38  RSVVSRKTTRTNSLTRRRSSTKAPSSARQSRSRSRSRSRSRSKSRST 84


>AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 225 IKQHNMQVFTYKMQVRRK*RTSWQQACAARSRVITN 332
           IK HN +V T++   RRK +   Q+  AA S ++ N
Sbjct: 672 IKHHNSEVLTFQKTQRRKYKR--QRMLAAASNIVNN 705


>AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 225 IKQHNMQVFTYKMQVRRK*RTSWQQACAARSRVITN 332
           IK HN +V T++   RRK +   Q+  AA S ++ N
Sbjct: 672 IKHHNSEVLTFQKTQRRKYKR--QRMLAAASNIVNN 705


>AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1
           suppressor/dio uptake defective/raf enhancer protein 1
           protein.
          Length = 909

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 225 IKQHNMQVFTYKMQVRRK*RTSWQQACAARSRVITN 332
           IK HN +V T++   RRK +   Q+  AA S ++ N
Sbjct: 672 IKHHNSEVLTFQKTQRRKYKR--QRMLAAASNIVNN 705


>Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical
           protein F01D5.3 protein.
          Length = 132

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +1

Query: 49  FFYIFCPHPADFCDIHQVVCPPCGGSTQVTSSGAC 153
           F  +FCP     C     + PP G S  V ++  C
Sbjct: 47  FLDVFCPKTCGLCSDSTTLVPPTGSSNCVDTNVHC 81


>Z29095-3|CAA82355.1|  161|Caenorhabditis elegans Hypothetical
           protein R10E11.2 protein.
          Length = 161

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 197 GAVAGAVTKYQTA*YASIYVQNAGAAKVADKLATGVCGALAGY 325
           G V   V K +    ++ Y  N G A +A  L  G+CG  AGY
Sbjct: 72  GLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGY 114


>AC024762-4|AAF59473.1|  161|Caenorhabditis elegans Vacuolar h
           atpase protein 3 protein.
          Length = 161

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 197 GAVAGAVTKYQTA*YASIYVQNAGAAKVADKLATGVCGALAGY 325
           G V   V K +    ++ Y  N G A +A  L  G+CG  AGY
Sbjct: 72  GLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGY 114


>AB009566-1|BAA75066.1|  161|Caenorhabditis elegans Vha3 protein
           protein.
          Length = 161

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 197 GAVAGAVTKYQTA*YASIYVQNAGAAKVADKLATGVCGALAGY 325
           G V   V K +    ++ Y  N G A +A  L  G+CG  AGY
Sbjct: 72  GLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGY 114


>AB000918-1|BAA22596.1|  161|Caenorhabditis elegans VHA-2 protein.
          Length = 161

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 197 GAVAGAVTKYQTA*YASIYVQNAGAAKVADKLATGVCGALAGY 325
           G V   V K +    ++ Y  N G A +A  L  G+CG  AGY
Sbjct: 72  GLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGY 114


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 205 GGCGHEISNSIICKYLRTKCRCG 273
           GGC HE  N    ++ R +CR G
Sbjct: 219 GGCEHECENDSNGEFYRCRCRVG 241


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 205 GGCGHEISNSIICKYLRTKCRCG 273
           GGC HE  N    ++ R +CR G
Sbjct: 219 GGCEHECENDSNGEFYRCRCRVG 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,881,408
Number of Sequences: 27780
Number of extensions: 306715
Number of successful extensions: 853
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)