Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_P13
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 28 1.0
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 26 4.1
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 26 5.4
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 26 5.4
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 7.1
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb... 25 7.1
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb... 25 9.4
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 25 9.4
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 9.4
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 28.3 bits (60), Expect = 1.0
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +2
Query: 20 RRTGTRAEQPVEHRLRSGDDERESGRFRPLYRSTHSIQPQRD---QDYRPSHRPKVRVRH 190
RR + R R +R+ +R YR S + D +DY P+ R RH
Sbjct: 10 RRNYAQGRNYESSRSRGDQRDRDYREYRRNYRDERSSRRYEDSQRRDYSPARRRDRYERH 69
Query: 191 SECAQQRSGQR 223
E ++ S +R
Sbjct: 70 RESVREESPRR 80
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 65 RSGDDERESGRFRPLYRSTHSIQPQRDQDYRP---SHRPKVRVRHSECAQQR 211
RSG+ R + R Y S+ S QRD+DYR ++R + R E +Q+R
Sbjct: 5 RSGEHRRNYAQGRN-YESSRSRGDQRDRDYREYRRNYRDERSSRRYEDSQRR 55
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 545 CTQLSGTYNKSIALLTNGVLHDDQSQWVETRS 450
C++L G + S+ ++ GV +D W+E S
Sbjct: 217 CSELCGVLHSSMPIVVQGVSLEDFLAWLEENS 248
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = -2
Query: 509 ALLTNGVLHDDQSQWVETRSSVCIIGLLCEPHVPAYVPFMG 387
A L ++ +++ V T S + ++ ++C+PH ++ G
Sbjct: 63 AYLKESLMRKLRAKPVRTASGIAVVAVMCKPHRCPHIAMTG 103
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 192 QNVHNNEVVKDLPLPRYLWKVAKNSSRAERLSCAAALVALITCVGLIVYFTINAKDTSGT 371
+NV +VKD+ +Y+W K + + +S A LVA + ++ + DT T
Sbjct: 92 KNVTGQMIVKDML--QYIWPKGKTNLKVRVVSALALLVAAKILNVQVPFYFKSIIDTMNT 149
Query: 372 SI 377
++
Sbjct: 150 TL 151
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 493 PLVKSAIDLLYVPLSCVHYKLTSLERLATIFLTTS 597
P + S+I L + P H LTS E + TTS
Sbjct: 356 PNLNSSISLKFAPEDTAHNSLTSQENVGPQVTTTS 390
>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 561 LRTLGYDIPYNFMIGNDGRVY 623
L+TLG IP+ +G +GRV+
Sbjct: 182 LQTLGSYIPFEIAVGMNGRVW 202
>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 26 TGTRAEQPVEHRL-RSGDDERESGRFRPLYRSTHSIQPQR 142
+G +P+ H+L R + R RPL RS HS+ R
Sbjct: 251 SGKSIPRPLSHKLTRPRVTASGNSRRRPLSRSIHSLSSSR 290
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 5 VERK*RRTGTRAEQPVEHRLRSGDDERE 88
+ERK R+ +E PV+ R GD E+E
Sbjct: 8 IERKRRQLEGTSELPVKKAFRRGDWEKE 35
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 99 SALCTAVPTVSNLNVTKTTGLHIGPKFV 182
+A T +PT+SN+N T LH +V
Sbjct: 270 TASLTNIPTISNVNATNFHPLHSQQPYV 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,783
Number of Sequences: 5004
Number of extensions: 55666
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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