Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_P11
(290 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF... 44 3e-06
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ... 41 4e-05
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 29 0.18
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 1.7
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 2.2
SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2... 25 3.0
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 3.9
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 24 3.9
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 24 5.2
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 24 5.2
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 5.2
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 23 6.9
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 23 6.9
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 23 9.1
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces... 23 9.1
>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
4F complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 44.4 bits (100), Expect = 3e-06
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 112 FLIKHPLQNTWSLWFYDNDX-NKTWEENLIELTTFDTVEDFWRLY 243
F+ HPLQ+ W+LWF W + L E+ +F TVE+FW ++
Sbjct: 60 FVKTHPLQHEWTLWFLKPPTQGLEWSDLLKEIISFKTVEEFWGIF 104
>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 218
Score = 40.7 bits (91), Expect = 4e-05
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 112 FLIKHPLQNTWSLWF-YDNDXNKTWEENLIELTTFDTVEDFWRLY 243
F +KHPL W+LWF W E + TF++VE+FW ++
Sbjct: 34 FNLKHPLARPWTLWFLMPPTPGLEWNELQKNIITFNSVEEFWGIH 78
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 28.7 bits (61), Expect = 0.18
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -2
Query: 250 MMGTISKSPLLYQMWSTLLDSPPMFCFXRCRKTRDSRCSATGALSGIQAAPL 95
M+ I + PL+ Q S LL S CF R D+ SA G L ++ PL
Sbjct: 1297 MLLVIRRGPLVKQFASKLLQSLKSSCFDRNAAVSDAFASAIGYL--LRVCPL 1346
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.4 bits (53), Expect = 1.7
Identities = 9/42 (21%), Positives = 22/42 (52%)
Frame = -3
Query: 132 QRVLYQEFRRHLCISVGFSLRRSRSFYIFCIIPSHVTRISRC 7
+ +LY + C+++G + Y+ + P+ V R+++C
Sbjct: 278 EAILYPQILHGECVAIGMVKEAELARYLGILKPNAVGRLTKC 319
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.0 bits (52), Expect = 2.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 112 FLIKHPLQNTWSLWFYDNDXNKTWEENLIELTTF 213
F I+ L+ + + FY N NK W N +L TF
Sbjct: 511 FEIESSLRLSSNKVFYHNPKNKKWLINTSDLITF 544
>SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 24.6 bits (51), Expect = 3.0
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 117 DKAPVAEHLESLVLRQRXKQNMGGESNRVDHI*YSRGLLEIVPIXSNYRQS 269
DK +E L +L Q +N N V I S GL+ P+ NY S
Sbjct: 71 DKRYKSEKLSDYLLNQEHHKNSPKIINDVLVIGKSDGLINSFPLSQNYISS 121
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 24.2 bits (50), Expect = 3.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 226 PLLYQMWSTLLDSPPMFCFXRCRKTR 149
PLL +++STL P +FC +K R
Sbjct: 185 PLLLRVFSTLSRLPRLFCLCLQKKRR 210
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 24.2 bits (50), Expect = 3.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 2 YLHREILVTWLGIIQK 49
Y+H+E LV WLG +K
Sbjct: 33 YVHQECLVEWLGHSKK 48
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 23.8 bits (49), Expect = 5.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 59 PSTSSVLFPAMSQESH 12
P ++VLF AM QE H
Sbjct: 7 PENTAVLFEAMKQEQH 22
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 23.8 bits (49), Expect = 5.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 129 RVLYQEFRRHLCISVGFSLRRSRSFYIFCIIPSHVTRIS 13
R+L Q + + + + F +R S FY CI P+H+ S
Sbjct: 564 RILKQLWPYIIAMILNFIVRSSFIFY--CIFPNHIQHSS 600
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 23.8 bits (49), Expect = 5.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 120 KAPVAEHLESLVLRQRXKQNMGGESN 197
K+PV +H + R K+N G +SN
Sbjct: 233 KSPVQQHRSFVSSSARAKKNWGRQSN 258
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 106 PEFLIKHPLQNTWSLWFYDNDXNKTW 183
PE LI P TW W Y + + W
Sbjct: 444 PETLISDPKIYTWWGWLYLDLKERRW 469
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 134 RTPGVSGFTTTXETKHG 184
R G SGF TT KHG
Sbjct: 198 RIMGFSGFDTTTGKKHG 214
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 23.0 bits (47), Expect = 9.1
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = +1
Query: 130 LQNTWSLWFYDNDXN 174
+ N W W +D+D N
Sbjct: 960 ISNAWKAWAHDHDNN 974
>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 316
Score = 23.0 bits (47), Expect = 9.1
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +1
Query: 148 LWFYDNDXNKTWEENLIELTTFDTVEDFWRLYPSXQTTVRVTF 276
LWFY T L+ TT V F L Q R F
Sbjct: 175 LWFYSTSLRVTLLTFLLSFTTLHFVNKFSLLLKDQQYLHRQVF 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,143,893
Number of Sequences: 5004
Number of extensions: 19107
Number of successful extensions: 53
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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