Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_P11
         (290 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065...    48   1e-06
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449...    39   8e-04
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857...    34   0.022
06_01_0163 + 1273171-1273323,1273478-1273693                           27   1.9  
01_06_1119 - 34640611-34640721,34640995-34641075,34641437-346414...    27   3.3  
11_06_0370 + 22768977-22769523,22769619-22770642,22770784-227711...    26   4.4  
08_02_0189 + 13984892-13984943,13985929-13986480,13986577-139867...    26   4.4  
05_05_0246 + 23591759-23593042                                         26   5.8  
04_03_0075 + 10726807-10727721,10728756-10729496                       25   7.7  

>01_07_0331 +
           42804385-42804659,42806175-42806340,42806424-42806549,
           42807142-42807207,42807645-42807698,42808843-42809019,
           42809100-42809102
          Length = 288

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = +1

Query: 124 HPLQNTWSLWFYDNDXNK----TWEENLIELTTFDTVEDFWRLY 243
           HPL++ W+ WF DN   K    TW  ++  + TF TVEDFW LY
Sbjct: 52  HPLEHAWTFWF-DNPQGKSKQATWGSSIRPIHTFSTVEDFWSLY 94


>10_08_0323 +
           16743358-16743566,16744536-16744704,16744834-16744959,
           16745813-16745878,16745997-16746047
          Length = 206

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 124 HPLQNTWSLWFYDNDXNK---TWEENLIELTTFDTVEDFWRLYPSXQTTVRVT 273
           H L   W+ W+      K    W  +L +  TFDTVE+FW LY       +VT
Sbjct: 30  HKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVT 82


>03_02_0446 -
           8567436-8567567,8567649-8567768,8569837-8569914,
           8570018-8570122,8570214-8570306,8570464-8570619
          Length = 227

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 124 HPLQNTWSLWFYDND---XNKTWEENLIELTTFDTVEDFWRLY 243
           HPL+  + LW+        ++++E+N+ ++  F TVE FW  Y
Sbjct: 49  HPLRRRFVLWYTRRTPGARSQSYEDNIKKIVDFSTVESFWVCY 91


>06_01_0163 + 1273171-1273323,1273478-1273693
          Length = 122

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 100 VPPEFLIKHPLQNTWSLWFYD 162
           +P E+L+K P + TWS W +D
Sbjct: 98  LPAEYLVKRPRRRTWS-WRHD 117


>01_06_1119 -
           34640611-34640721,34640995-34641075,34641437-34641496,
           34641596-34641645,34641758-34641809,34642462-34642599,
           34642716-34642979,34643057-34643114,34643178-34643287,
           34643650-34643925
          Length = 399

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 168 IVVVKPETPGVLQRVLYQEFRRH 100
           I ++K E PG LQRV+ +  +RH
Sbjct: 362 IAILKGEVPGRLQRVVPEILKRH 384


>11_06_0370 +
           22768977-22769523,22769619-22770642,22770784-22771170,
           22771216-22771507
          Length = 749

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 223 LLYQMWSTLLDSPPMFCFXRCRKTRDSRCS 134
           L+Y+MW +++D      +    K  D +CS
Sbjct: 483 LIYEMWDSMIDKVKKIIYRHEGKELDEQCS 512


>08_02_0189 +
           13984892-13984943,13985929-13986480,13986577-13986759,
           13986826-13987006,13987238-13987654,13987742-13988128,
           13988176-13988467
          Length = 687

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 223 LLYQMWSTLLDSPPMFCFXRCRKTRDSRCS 134
           L+Y+MW +++D      +    K  D +CS
Sbjct: 403 LIYEMWDSMIDKVKKIIYRHEGKELDEQCS 432


>05_05_0246 + 23591759-23593042
          Length = 427

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 220 VEDFWRLYPSXQTTVRVTFRDM 285
           V++  RL+P     VR TFRDM
Sbjct: 269 VQETLRLFPPSSFVVRETFRDM 290


>04_03_0075 + 10726807-10727721,10728756-10729496
          Length = 551

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 175 KTWEENLIELTTFDTVEDFWRLYPSXQTTVRVTFRD 282
           K W+      T ++  ++F R YPS Q    +T RD
Sbjct: 454 KIWQCGFFWPTMYEDSKEFVRRYPSCQRQGGITARD 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,798,366
Number of Sequences: 37544
Number of extensions: 130534
Number of successful extensions: 325
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)