Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_P11
         (290 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   4.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   5.4  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              20   7.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    20   7.1  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    19   9.4  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    19   9.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    19   9.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 1.0
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 96  CISVGFSLRRSRSFYIF-CIIPS 31
           CI + F+LRR   +++F   IPS
Sbjct: 202 CIQIVFNLRRRLGYHLFHTYIPS 224


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 241 TISKSPLLYQMWSTLLDSPPMFCFXRC 161
           ++S    + ++ S +L SPP F   RC
Sbjct: 454 SVSGEAGIEEVKSPVLRSPPAFSHSRC 480


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 241 TISKSPLLYQMWSTLLDSPPMFCFXRC 161
           ++S    + ++ S +L SPP F   RC
Sbjct: 454 SVSGEAGIEEVKSPVLRSPPAFSHSRC 480


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 121 KHPLQNTW 144
           KH LQNTW
Sbjct: 337 KHLLQNTW 344


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 142 RCSATGALSGI 110
           RC+ATGA S I
Sbjct: 363 RCNATGAFSWI 373


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 243 VQSPKVLYCIKCGQL 199
           ++ P    CIKCG +
Sbjct: 129 IREPVECKCIKCGDI 143


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 243 VQSPKVLYCIKCGQL 199
           ++ P    CIKCG +
Sbjct: 129 IREPVECKCIKCGDI 143


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 95  QRCRLNS**STRCRTPGVSGFTTTXETKHGRR 190
           ++ R+N+  STR R    +  + + ET H  R
Sbjct: 232 RQSRINAVQSTRHREADDAEESVSSETNHNER 263


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 95  QRCRLNS**STRCRTPGVSGFTTTXETKHGRR 190
           ++ R+N+  STR R    +  + + ET H  R
Sbjct: 232 RQSRINAVQSTRHREADDAEESVSSETNHNER 263


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 95  QRCRLNS**STRCRTPGVSGFTTTXETKHGRR 190
           ++ R+N+  STR R    +  + + ET H  R
Sbjct: 232 RQSRINAVQSTRHREADDAEESVSSETNHNER 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,882
Number of Sequences: 438
Number of extensions: 1307
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)