Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_P10
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   217   1e-57
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   216   2e-57
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   5.1  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    26   5.1  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   6.7  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   6.7  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  217 bits (529), Expect = 1e-57
 Identities = 111/189 (58%), Positives = 136/189 (71%), Gaps = 1/189 (0%)
 Frame = +1

Query: 1   VLRVAGCNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSV 180
           V ++ G NDKQGFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+V
Sbjct: 49  VFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAV 108

Query: 181 LALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR-LLPAKEG 357
           LAL I+++G Q+IPGLTD  VP+RLGPKRASKIR+ FNL KEDDVR++V++R ++P KEG
Sbjct: 109 LALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEG 168

Query: 358 KENAKPRYKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLAQRTKESKVR 537
           K   KP  KAPKIQRLVTP  LQ                    A++A+L+A+R  E+K +
Sbjct: 169 K---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQK 225

Query: 538 RSEEIKRRR 564
           R E +K RR
Sbjct: 226 R-EVVKARR 233


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  216 bits (528), Expect = 2e-57
 Identities = 111/189 (58%), Positives = 136/189 (71%), Gaps = 1/189 (0%)
 Frame = +1

Query: 1   VLRVAGCNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSV 180
           V ++ G NDKQGFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+V
Sbjct: 49  VFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAV 108

Query: 181 LALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR-LLPAKEG 357
           LAL IV++G Q+IPGLTD  VP+RLGPKRASKIR+ FNL KEDDVR++V++R ++P KEG
Sbjct: 109 LALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEG 168

Query: 358 KENAKPRYKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLAQRTKESKVR 537
           K   KP  KAPKIQRLVTP  LQ                    A++A+L+A+R  E+K +
Sbjct: 169 K---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAK-Q 224

Query: 538 RSEEIKRRR 564
           + E +K RR
Sbjct: 225 KKEVVKARR 233


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 101 EWPFDIKRRTRLLVRTPCFIGKPC 30
           EWP  +K   +LLVRT  +   PC
Sbjct: 26  EWPLLLKNFDKLLVRTGHYTPIPC 49


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 501 TTSTENEGIQGPPFRRDQTQAFRLSMRDSKSSSHSAPQ 614
           T + E+E ++ PP  RD+  A   +   SK++ +SA Q
Sbjct: 114 TQTMEDENVEVPPLERDERDA--AAAHTSKANRNSARQ 149


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 534 PPFRRDQTQAFRLSMRDSKSSSHSAP 611
           PPF R+ T+   LS+    SSSH  P
Sbjct: 216 PPFPRESTEKPLLSVSALSSSSHLQP 241


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = -3

Query: 362 SLPSLAGKXXXXXXXXXXXXXFKLNNLRILDARL-GPRRRGTSPSVSPGISCAPLRTMTR 186
           SLPS+ G+                N  + ++  +  P ++ TSP  +   + AP+   + 
Sbjct: 35  SLPSILGEKSEVSKPFKPAVTDPSNAKKEINMAIESPSKKATSPKKATPAAVAPVEATSA 94

Query: 185 AKTERLASTMQP 150
             T    ++M P
Sbjct: 95  VDTSEAVASMTP 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,241
Number of Sequences: 5004
Number of extensions: 42445
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)