Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_P10
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   193   7e-50
U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical p...    28   6.2  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  193 bits (471), Expect = 7e-50
 Identities = 105/188 (55%), Positives = 123/188 (65%)
 Frame = +1

Query: 1   VLRVAGCNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSV 180
           V+R+ G NDKQGFPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S 
Sbjct: 49  VVRIGGGNDKQGFPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSA 108

Query: 181 LALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGK 360
           L+LVIV+KG  EI GLTD  +PR+LGPKRASKIRKLFNL K DDV +YV+       +G 
Sbjct: 109 LSLVIVKKGDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDG- 167

Query: 361 ENAKPRYKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLAQRTKESKVRR 540
                +  APKIQRL+TP  +                     A Y KLLA   K SK   
Sbjct: 168 ---VTKTIAPKIQRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLA---KYSKEEH 221

Query: 541 SEEIKRRR 564
             +I RRR
Sbjct: 222 DAKIARRR 229


>U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical
           protein W03A5.1 protein.
          Length = 832

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 304 EDDVRRYVVKRLLPAKEGKENAKPRYKAPKIQRL 405
           +DD RRY  K L    +   N KPRYK  K   +
Sbjct: 276 DDDGRRYFCKLLKQIAQKTANPKPRYKLSKCSHI 309


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 257 PRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRGL*QEWPFDIKR 78
           P    T+P+ +P  +  P  T T AKT + ++T   +T     +P+      + PFD  +
Sbjct: 269 PTTTTTTPTTTPTTTTTPTTTTTTAKTTK-STTTTTKTTKTTSTPTTTTTTPKTPFDTSK 327

Query: 77  RT 72
            T
Sbjct: 328 CT 329


>Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.13 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 341 YLPKRARKMQNPDTRRLKSR 400
           YL KR +KM+NP  ++L++R
Sbjct: 190 YLSKRRKKMENPAMKKLRTR 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,922,039
Number of Sequences: 27780
Number of extensions: 253540
Number of successful extensions: 684
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)