Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_P09
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.6
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 27 2.1
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 26 3.7
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 26 3.7
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 25 6.5
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 6.5
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual 25 8.6
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 8.6
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 1.6
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -1
Query: 456 SSSHRVPNVLPVPAASKAHTGPPGADTHRPAHSAGGTPSPTRARTNSAGDRI-SGSSTS* 280
SSS P VP S + T P T + +P PT + + + I +G S+S
Sbjct: 184 SSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSL 243
Query: 279 ASPI 268
++PI
Sbjct: 244 STPI 247
Score = 25.8 bits (54), Expect = 3.7
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = -1
Query: 456 SSSHRVPNVLPVPAASKAHTGPPGADTHRPAHSAGGTPSPTRAR--TNSAGDRISGSSTS 283
SSS P VP S + T P T + P PT + T S +G S+S
Sbjct: 127 SSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSS 186
Query: 282 *ASPI 268
++PI
Sbjct: 187 LSTPI 191
Score = 25.0 bits (52), Expect = 6.5
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = -1
Query: 456 SSSHRVPNVLPVPAASKAHTGPPGADTHRPAHSAGGTPSPTRAR--TNSAGDRISGSSTS 283
SSS P VP S + T P T + +P PT + T S +G+ST+
Sbjct: 240 SSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTT 299
Query: 282 *ASP 271
+P
Sbjct: 300 PVTP 303
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 399 TGPPGADTHRPAHSAGGTPSPTRARTNSAGDRISGSST 286
+ P G + A SA TP+P+R+ ++AG R + ++T
Sbjct: 131 SSPYGGYSPSGASSARQTPAPSRSGASTAGRRRTSATT 168
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 3.7
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = -2
Query: 122 YYKIVNRVYFTTYANSMRIYDRYYGYSCYVFE 27
Y K++N + Y ++++I ++Y G + V+E
Sbjct: 28 YQKVLNLIDIERYEHALKIIEKYLGETDAVYE 59
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 185 RLSFPTDYPNTDSPHTKRLFNYYK 114
+L PTD P++D TKR Y+
Sbjct: 771 KLKIPTDLPSSDYQRTKRKLETYE 794
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 439 AECSACARGVESAHWSA-GGRHAPS 368
A+CS C + +E A+W+ GGR PS
Sbjct: 119 ADCSGCKQLIE-AYWNEHGGRPEPS 142
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 191 TFRLSFPTDYPNTDSPHTKRLFNYYKIVNRVYFTTYANSMRIYDR 57
T RL +P D PH+ + Y+I+N + FT+ M + R
Sbjct: 817 TIRLHYPLD------PHSHPIAKTYRILNIIEFTSKRKCMSVIVR 855
>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 295 FIDFISVTHTRRYEP*SGRLYLITS 221
+ID I HTR P G+ YL TS
Sbjct: 227 YIDTIIPLHTRYQSPLKGQTYLKTS 251
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 24.6 bits (51), Expect = 8.6
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = -1
Query: 465 ETASSSHRVP----NVLPVPAASKAHTGPPGADTHRPAHSAGGTPSPTRARTNSAGDRIS 298
+T S HR P ++ P P+ T P H+ S + SPT ++ +S
Sbjct: 53 DTTHSRHRYPETPPSLPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLS 112
Query: 297 GSSTS 283
S+ +
Sbjct: 113 PSTAA 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,671
Number of Sequences: 5004
Number of extensions: 40245
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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