Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_P08
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 27 3.1
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 27 3.1
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 27 3.1
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 4.1
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 4.1
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 4.1
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 26 5.4
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 26 5.4
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 7.1
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 25 7.1
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 25 7.1
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.4
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 9.4
SPBC216.06c |swi1||replication fork protection complex subunit S... 25 9.4
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 9.4
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 533 QNKIVRNSNEFSLFKEDSLPLTDLMKFLDEGKSPLYMS 646
Q+K++R++N + +S P+ + FLD P+Y+S
Sbjct: 200 QDKVIRSANNLII---NSQPILPVRSFLDALGEPIYLS 234
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 112 DPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 261
+P F Q Y IVG I + K + + +P+ K + I + V+E VT+ D
Sbjct: 6 EPEFQQAYKEIVGSIESSKLF-EVHPELKRVLPIISIPERVLEFRVTWED 54
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 186 IRLQVMLECVNVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 49
I Q L+ + TH NPV EC +S+C L K G E L + F
Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 491 FYELDWFTHKITPGQNKIVRNSNE--FSLFKEDSLPLTDLMKFLD 619
F LDWFT+ + QN+++R S + F + L L +K L+
Sbjct: 654 FPTLDWFTNDSSVIQNELLRRSVDTYFRYIFQTDLKLEQRIKLLE 698
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 419 IKIFLGPKYNDNGFPITLEENWHKFYELDWFTHKIT 526
+ I L P ND + T WHKF++ WF +T
Sbjct: 416 LHIELAPAANDIQWHNTYIGRWHKFFQ-GWFITLVT 450
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 394 LNVDGNTERLVVESWLTNLEVVWVTSLNLSFWSRI 290
L VD T+RLV L ++W+T L S+W R+
Sbjct: 452 LQVDNPTDRLV-------LVLIWLTQLQESWWYRV 479
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 633 GLFPSSKNFMRSVNGKESSLKSENSFELRTILFCPGV 523
G FPS + + GK + +KS F+L+ +L C GV
Sbjct: 131 GKFPSPVSHADDLYGKITEVKSTIKFQLKKVL-CLGV 166
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.4
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = -3
Query: 624 PSSKNFMRSVNGKESSLKSENSFELRTILFCPGVILCVNQSSS*NLCQFSSNVMGNPLSL 445
PS F + + S S N F + IL P L SS F +N P+S+
Sbjct: 249 PSYSIFPGQIVSVKGSNPSGNMFIAKEILPIPP--LPFPSSSKQEHATFVANTNNQPISI 306
Query: 444 YLGPKKILITASVAISDLTSMVT 376
Y+ + ++ S L SM++
Sbjct: 307 YIASGPWSLRDDLSFSPLKSMIS 329
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 10 YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 114
Y +ARH L + FD HTF + FY T RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 25.4 bits (53), Expect = 7.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 486 CQFSSNVMGNPLSLYLGPKKILITASVAISDLTSMV-TLKGLWLSRG 349
CQF V+G L+ K LI+ S A L+++ + KG LS G
Sbjct: 113 CQFWETVLGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMG 159
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 438 LSTTIMDSPSHWKKTGINSTNWIG 509
LS + S+W++T ++ TNW+G
Sbjct: 208 LSVKAIIFASYWQQTVLSITNWLG 231
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 305 REIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYNDNGFPI 466
+ I+ SYP+ F R P+ H P + +D + A + V L P+ N P+
Sbjct: 606 QHIQYSYPNTFVNRFPQNIHHPSANLLDASA--ALNPVQNPLLMPQQNHEHSPL 657
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 119 HSISYITGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SH 253
+S S I W T HSS+ +L R + S + ++ LRN H
Sbjct: 973 NSKSVIGENWTTCLHSSLVDNLGKYRKYDGSKILDILRVLRNKRH 1017
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 566 SLFKEDSLP-LTDLMKFLDEGKSPLY 640
+LF E P LTD +L+ GKSPL+
Sbjct: 658 ALFIELPFPKLTDTFYYLEYGKSPLF 683
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +2
Query: 44 HLNHSTSTPSCPVRLTF--TKPHFETLHSISYITGLWVTLT 160
HL S STPS LTF T + T H LW L+
Sbjct: 605 HLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLS 645
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,141
Number of Sequences: 5004
Number of extensions: 55859
Number of successful extensions: 169
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -