Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_P08
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0106 + 788967-789555,790139-790162,790339-791411                 31   1.0  
11_04_0359 + 16735204-16735676,16736597-16736647,16736860-167369...    29   4.2  
11_06_0760 + 27017956-27018433,27018487-27019234,27023760-270243...    28   5.6  
01_05_0548 + 23149271-23149568,23149766-23149845,23150137-231502...    28   5.6  
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380...    28   7.4  
05_03_0394 - 13440871-13441098,13441197-13441394,13441491-134415...    28   7.4  
03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330     28   7.4  

>01_01_0106 + 788967-789555,790139-790162,790339-791411
          Length = 561

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 350 PRLNHKPFSVTIDVKSDIATDA--VIKIFLGPKYNDNGFPITLEENWHKFYELDWFTHKI 523
           P L  + F V I  KSD+ +    V+++  G +  D G      +N H+ Y L+W   K+
Sbjct: 437 PELYSRNFGV-ISYKSDVYSFGMLVLEMVSGRRNLDPGI-----DNQHEVYFLEWIYEKV 490

Query: 524 TPGQNKIV 547
             GQN ++
Sbjct: 491 FTGQNLLI 498


>11_04_0359 +
           16735204-16735676,16736597-16736647,16736860-16736934,
           16737011-16737062,16737147-16737280,16737397-16737511,
           16737665-16737751,16737855-16737903,16738351-16738435,
           16738641-16738715,16738848-16739029,16739905-16739969
          Length = 480

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -3

Query: 321 LVLISLFGQEYTVSGIKLAIVKECD*FLNDNIIDFNADEMKF 196
           +V+  LFG +Y +  ++++   +C    N  IIDF+ +  ++
Sbjct: 404 MVVTKLFGHKYDLCSLRISGASKCKQNFNGEIIDFSPNSHRW 445


>11_06_0760 +
           27017956-27018433,27018487-27019234,27023760-27024378,
           27030755-27032440
          Length = 1176

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 251 HSLTIANLMPLTVYS*PKREIKTSYPHNFKVRQPRLNHKPFSVTIDVKSD 400
           H   I+ L PL   +  +R    S   N K+R+ +L   P ++T+D + D
Sbjct: 257 HQAVISYLHPLMPKALRRRSSSNSNSDNSKIREGKLTRLPRALTLDRQYD 306


>01_05_0548 +
           23149271-23149568,23149766-23149845,23150137-23150223,
           23150421-23150729,23150774-23150899,23151977-23152360,
           23152603-23152608
          Length = 429

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 308 EIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYNDNGFP 463
           ++KT    ++ ++ PRL +   S+  DV + +  D  +K +    Y  NG P
Sbjct: 90  DLKTVATIDWSMKTPRLQYYTSSMVDDVFTRLGEDIKVKPWAHTVYGKNGIP 141


>07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,
            3808278-3808347,3808431-3808486,3808578-3808649,
            3808678-3808811,3808967-3809030,3809111-3809240,
            3809326-3809541,3809629-3809750,3810527-3810701,
            3810788-3810878,3811040-3811197,3811330-3811518,
            3813257-3813340,3813362-3813536,3815300-3815955,
            3816226-3816648,3816752-3816790
          Length = 1151

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 490  ILRTGLVHAQDNSWAKQDCTQLKRIFAFQRGLFTVDRSHEVFRR 621
            +L T L  A+D+ W +++   ++R+   Q+ L  ++ S  V RR
Sbjct: 893  VLWTNLEKAEDDLWLREEQLSIERLILCQKAL-EMEESERVHRR 935


>05_03_0394 -
           13440871-13441098,13441197-13441394,13441491-13441594,
           13441687-13442551,13442677-13443045,13443372-13443533,
           13443838-13444056,13444138-13444656,13444742-13444819,
           13446041-13446163
          Length = 954

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 493 LRTGLVHAQDNSWAKQDCTQLKRIFAFQRGL-FTVD 597
           LR G+ H + ++   +DC      F FQ G  FT+D
Sbjct: 148 LRFGMTHRRPSANTSEDCADADEKFGFQSGSDFTLD 183


>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
          Length = 380

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 418 NGISGNIGLNVDGNTERLVVESWLTNLEVVWVTS 317
           NG +     +  G T+R+++ SWL+ LE+ + T+
Sbjct: 224 NGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,504,497
Number of Sequences: 37544
Number of extensions: 328979
Number of successful extensions: 798
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)