Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_P08
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical... 31 0.70
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr... 29 2.8
U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore co... 28 5.0
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 28 5.0
U49830-12|AAL16311.1| 363|Caenorhabditis elegans Hypothetical p... 28 5.0
Z81114-4|CAB03288.2| 688|Caenorhabditis elegans Hypothetical pr... 28 6.6
AY652944-1|AAT73711.1| 688|Caenorhabditis elegans guanylate cyc... 28 6.6
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 27 8.7
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 8.7
>AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical
protein Y56A3A.15 protein.
Length = 292
Score = 31.1 bits (67), Expect = 0.70
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Frame = +2
Query: 365 KPFSVTIDVKSDIATDAVIKIFLGPKYNDNGF---PITLEENWHKFYELDWFTHKITPGQ 535
K F V I S+I + ++++F P ++ G PI + H FY L++F K+T
Sbjct: 143 KTFGVKI-ASSEIQSSHLLELF--PSLSNLGVYNVPINTQILTHNFYWLEFFKTKVTL-D 198
Query: 536 NKIVRNSNEFSLFKEDSLPLTDLMKFL 616
+ +V N ++FS+ + ++LP +L F+
Sbjct: 199 DILVSNCSKFSI-EYNNLPDKELNLFM 224
>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical
protein C46A5.4 protein.
Length = 1432
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = +2
Query: 278 PLTVYS*PKREIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYNDNG 457
P +Y + + + N + +P L+ P T K DIA I + D+G
Sbjct: 434 PALIYEKGRIDGMLKFLLNAPIEKPGLHSSPLLRTAFQKKDIADSVDIIAMVIQMGRDHG 493
Query: 458 FPITLEENWHKFYELDWFT 514
P L+ W F +LD F+
Sbjct: 494 LPSYLQ--WRTFCKLDDFS 510
>U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform b protein.
Length = 889
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 50 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 175
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 50 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 175
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U49830-12|AAL16311.1| 363|Caenorhabditis elegans Hypothetical
protein C33F10.13 protein.
Length = 363
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +2
Query: 353 RLNHKPFSVTIDVKSDIATDAVIKIFLG-PKYNDNGFP--ITLEENWHKFYELDWFTHKI 523
R N +SV D K D A+ + L P ++ P ++L E ++ +F+ K+
Sbjct: 156 RHNFDFYSVFTDFK-DFEIGAIRRCSLSCPPFSSQSLPDLLSLTEQISFNFDSSYFS-KL 213
Query: 524 TPGQNKIVRNSNEFSLFKEDSLPLTDLM 607
+ + +N + SL EDS+PLTDL+
Sbjct: 214 EKFKEIVSKNLSYLSL--EDSIPLTDLL 239
>Z81114-4|CAB03288.2| 688|Caenorhabditis elegans Hypothetical
protein T04D3.4 protein.
Length = 688
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 488 KFYELDWFTHKITPGQNKIVRNSNEFSLFKEDSLPLTDLMKFLDEGKSPLYM 643
K+Y+ F ++ G IV N+N+ + ++ L M F+DEGK LYM
Sbjct: 279 KYYKNSLFVFRLK-GLGDIVHNAND----EAKTVLLKGSMVFIDEGKYILYM 325
>AY652944-1|AAT73711.1| 688|Caenorhabditis elegans guanylate
cyclase-like protein protein.
Length = 688
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 488 KFYELDWFTHKITPGQNKIVRNSNEFSLFKEDSLPLTDLMKFLDEGKSPLYM 643
K+Y+ F ++ G IV N+N+ + ++ L M F+DEGK LYM
Sbjct: 279 KYYKNSLFVFRLK-GLGDIVHNAND----EAKTVLLKGSMVFIDEGKYILYM 325
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 441 LGPKKILITASVAISDLTSMVTLKGLWLSRG*RTLK 334
+G TAS++ D+ M+ LW+SR LK
Sbjct: 1932 IGTSSETTTASISYQDIPEMLAASKLWISRNSEKLK 1967
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 441 LGPKKILITASVAISDLTSMVTLKGLWLSRG*RTLK 334
+G TAS++ D+ M+ LW+SR LK
Sbjct: 1932 IGTSSETTTASISYQDIPEMLAASKLWISRNSEKLK 1967
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,636,295
Number of Sequences: 27780
Number of extensions: 305808
Number of successful extensions: 805
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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